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SMTL ID : 3igp.1

Structure of inhibitor binding to Carbonic Anhydrase II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: DT7.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x DT7: 6,7-dimethoxy-3,4-dihydroisoquinoline-2(1H)-sulfonamide(Non-covalent)

DT7.2:	15 residues within 4Å: Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, P.200, P.201, W.208 Ligands: ZN.1, GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.121, A:F.130 Hydrogen bonds: A:T.198, A:T.198
DT7.3:	9 residues within 4Å: Chain A: H.4, W.5, H.10, N.11, H.15, W.16, K.18, D.19, F.20 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.4 Hydrogen bonds: A:D.19, A:D.19, A:D.19 Water bridges: A:S.2 Salt bridges: A:D.19

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:	8 residues within 4Å: Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199 Ligands: DT7.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.62, A:N.67, A:Q.92 Water bridges: A:T.199
GOL.5:	4 residues within 4Å: Chain A: Y.7, D.242, W.244, P.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.7, A:W.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Gitto, R. et al., Identification of 3,4-Dihydroisoquinoline-2(1H)-sulfonamides as Potent Carbonic Anhydrase Inhibitors: Synthesis, Biological Evaluation, and Enzyme-Ligand X-ray Studies. J.Med.Chem. (2010)

Release Date

2010-03-09

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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