SMTL ID : 3igz.1

Crystal structures of Leishmania mexicana phosphoglycerate mutase at low cobalt concentration

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 6 residues within 4Å: Chain A: D.425, H.429, H.467, H.496 Ligands: 3PG.4, 2PG.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.425, A:D.425, A:H.429, A:H.496 CO.3: 7 residues within 4Å: Chain A: D.23, S.75, K.357, D.466, H.467 Ligands: 3PG.4, 2PG.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.23, A:S.75, A:D.466, A:H.467, 3PG.4

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: V.36, H.37, A.39, T.41, D.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.39, A:T.41 Water bridges: A:T.41

1 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.4: 20 residues within 4Å: Chain A: D.23, N.74, S.75, V.135, H.136, R.166, D.167, R.202, R.209, R.282, R.285, K.357, H.360, D.425, H.429, H.467, H.496 Ligands: CO.1, CO.3, 2PG.5 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.75, A:R.202, A:R.202 Water bridges: A:R.209, A:R.209 Salt bridges: A:H.136, A:R.166, A:R.202, A:R.209, A:R.209, A:R.282, A:R.282, A:R.285, A:K.357, A:H.360, A:H.429, A:H.429, A:H.467, A:H.496

1 x 2PG: 2-PHOSPHOGLYCERIC ACID(Non-covalent)

2PG.5: 20 residues within 4Å: Chain A: D.23, N.74, S.75, V.135, H.136, R.166, D.167, R.202, R.209, R.282, R.285, K.357, H.360, D.425, H.429, H.467, H.496 Ligands: CO.1, CO.3, 3PG.4 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.75, A:R.202, A:R.202 Water bridges: A:R.209, A:R.209 Salt bridges: A:H.136, A:R.166, A:R.202, A:R.209, A:R.209, A:R.282, A:R.282, A:R.285, A:K.357, A:H.360, A:H.467, A:H.496

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nowicki, M.W. et al., Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass. J.Mol.Biol. (2009)

Release Date

2009-10-27

Peptides

Cofactor-independent phosphoglycerate mutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cofactor-independent phosphoglycerate mutase

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