SMTL ID : 3iht.1

Crystal structure of S-adenosyl-L-methionine methyl transferase (YP_165822.1) from SILICIBACTER POMEROYI DSS-3 at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 16 residues within 4Å: Chain A: G.48, L.49, G.50, N.51, G.52, R.53, T.54, E.71, R.72, G.90, D.91, I.92, D.113, L.114, G.115, F.125 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.50, A:N.51, A:G.52, A:R.53, A:T.54, A:T.54, A:T.54, A:R.72, A:R.72, A:D.91, A:I.92, A:D.113 Water bridges: A:Q.26, A:T.54, A:Y.55, A:Y.55, A:E.71, A:R.72, A:R.72, A:A.73 Salt bridges: A:D.113 pi-Cation interactions: A:R.72

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: E.152 Ligands: NI.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.152, H2O.7 NI.3: 2 residues within 4Å: Chain A: E.152 Ligands: NI.2 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: R.148, E.156 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.148, A:R.148, A:E.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of S-adenosyl-L-methionine methyl transferase (YP_165822.1) from SILICIBACTER POMEROYI DSS-3 at 1.80 A resolution. To be published

Release Date

2009-08-25

Peptides

S-adenosyl-L-methionine methyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S-adenosyl-L-methionine methyl transferase