SMTL ID : 3ijy.2 (1 other biounit)

Structure of S67-27 in Complex with Kdo(2.8)Kdo

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KDA- KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid(Non-covalent)

KDA-KDO.1: 10 residues within 4Å: Chain A: N.31, R.33, S.97, N.98, R.101 Chain B: Y.33, R.52, K.56, I.102, E.111 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.33, B:K.56, B:Y.33, A:N.31, A:S.97, A:L.100, A:R.101, A:R.101 Salt bridges: B:K.56, B:R.52 Hydrophobic interactions: B:I.102

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: R.52, E.61 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brooks, C.L. et al., The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen. Glycobiology (2010)

Release Date

2009-10-06

Peptides

Immunoglobulin light chain (IGG3): A
Immunoglobulin heavy chain (IGG3): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Immunoglobulin light chain (IGG3)

Immunoglobulin heavy chain (IGG3)

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