SMTL ID : 3imb.3 (3 other biounits)

Alternative binding mode of restriction endonuclease BcnI to cognate DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x DG- DT- DC- DC- DG- DG- DG- DC- DG: 5'-D(*GP*TP*CP*CP*GP*GP*GP*CP*G)-3'(Non-covalent)

DG-DT-DC-DC-DG-DG-DG-DC-DG.1: 39 residues within 4Å: Chain A: D.32, D.33, G.34, V.36, G.37, Q.38, E.41, N.49, N.50, I.51, T.52, D.55, E.60, K.62, G.63, M.64, R.65, R.67, S.71, T.74, F.76, H.77, K.78, K.79, K.152, D.215, R.216, G.217, H.219, R.221 Ligands: DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2, DC-DG-DC-DC-DC-DG-DG-DA-DC.2 Protein-ligand interaction information (PLIP) not available

1 x DC- DG- DC- DC- DC- DG- DG- DA- DC: 5'-D(*CP*GP*CP*CP*CP*GP*GP*AP*C)-3'(Non-covalent)

DC-DG-DC-DC-DC-DG-DG-DA-DC.2: 34 residues within 4Å: Chain A: R.30, T.31, D.32, D.33, E.48, N.50, Y.95, K.97, S.99, S.100, R.101, K.109, F.111, T.113, K.115, R.118, N.120, N.121, D.200, C.202, D.204, H.214, R.216, H.219, R.221 Ligands: DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1, DG-DT-DC-DC-DG-DG-DG-DC-DG.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sokolowska, M. et al., How BcnI and MvaI distinguish W from S. To be Published

Release Date

2010-08-11

Peptides

R.BcnI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

R.BcnI

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