- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.2: 13 residues within 4Å:- Chain A: T.77, S.94, N.96, R.100, R.109, Y.139, D.275, A.308
- Chain B: K.212, I.215, D.252
- Ligands: NDP.1, CA.3
12 PLIP interactions:9 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:T.77, A:S.94, A:N.96, A:Y.139, B:K.212, B:T.214
- Water bridges: A:D.275, A:D.279, A:D.279, B:D.252
- Salt bridges: A:R.100, A:R.109
AKG.8: 12 residues within 4Å:- Chain A: I.215, D.252
- Chain B: T.77, S.94, N.96, R.100, R.109, Y.139, D.275, A.308
- Ligands: NDP.7, CA.9
12 PLIP interactions:10 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.94, B:N.96, B:Y.139, A:T.214
- Water bridges: B:T.77, B:T.77, B:R.109, B:S.278, B:D.279, A:D.252
- Salt bridges: B:R.100, B:R.109
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: R.109, D.275, D.279
- Chain B: D.252
- Ligands: AKG.2
5 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:D.275, A:D.279, B:D.252, H2O.1, H2O.1
CA.9: 5 residues within 4Å:- Chain A: D.252
- Chain B: R.109, D.275, D.279
- Ligands: AKG.8
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:D.275, B:D.279, A:D.252, H2O.5, H2O.5
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: Q.323, E.324, T.325, N.393, T.394, F.395
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.325, A:N.393, A:F.395
GOL.6: 10 residues within 4Å:- Chain A: F.108, R.109, E.110, I.129, M.199, K.203, T.292, S.293, V.294, R.338
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:E.110, A:E.110, A:K.203, A:K.203, A:T.292, A:T.292, A:V.294
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dang, L. et al., Cancer-associated IDH1 mutations produce 2-hydroxyglutarate. Nature (2009)
- Release Date
- 2009-11-24
- Peptides
- Isocitrate dehydrogenase [NADP] cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dang, L. et al., Cancer-associated IDH1 mutations produce 2-hydroxyglutarate. Nature (2009)
- Release Date
- 2009-11-24
- Peptides
- Isocitrate dehydrogenase [NADP] cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B