SMTL ID : 3io3.2 (1 other biounit)

GEt3 with ADP from D. Hansenii in Closed form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: K.26, G.28, V.29, G.30, K.31, T.32, T.33, N.268, P.310, L.311, L.312, C.314, E.315, I.316, F.325 Chain B: K.26, E.241, L.243, R.286 26 PLIP interactions: 20 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:G.28, A:V.29, A:G.30, A:K.31, A:T.32, A:T.32, A:T.32, A:T.33, A:T.33, A:N.268, A:P.310, A:L.312, A:I.316, B:E.241 Water bridges: A:K.31, A:T.32, A:T.33, A:N.61, A:E.315, A:I.316, B:K.26, B:L.243, B:L.243, B:R.286 Salt bridges: A:K.31, B:K.26 ADP.8: 19 residues within 4Å: Chain A: K.26, E.241, L.243, R.286 Chain B: K.26, G.28, V.29, G.30, K.31, T.32, T.33, N.268, P.310, L.311, L.312, C.314, E.315, I.316, F.325 26 PLIP interactions: 20 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:G.28, B:V.29, B:G.30, B:K.31, B:T.32, B:T.32, B:T.32, B:T.33, B:T.33, B:N.268, B:P.310, B:L.312, B:I.316, A:E.241 Water bridges: B:K.31, B:T.32, B:T.33, B:N.61, B:E.315, B:I.316, A:K.26, A:L.243, A:L.243, A:R.286 Salt bridges: B:K.31, A:K.26

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.280, C.283 Chain B: C.280, C.283 Ligands: ZN.9 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.280, B:C.283, A:C.280, A:C.283 ZN.9: 5 residues within 4Å: Chain A: C.280, C.283 Chain B: C.280, C.283 Ligands: ZN.2 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.280, B:C.283, A:C.280, A:C.283

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: D.57 Chain B: G.27 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain A: G.27 Chain B: D.57 No protein-ligand interaction detected (PLIP)

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: G.25, K.26, T.166, G.167, E.247 Chain B: P.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.25, A:E.247 Water bridges: A:G.167 GOL.5: 4 residues within 4Å: Chain A: D.261, V.262, D.303, Y.304 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.261 GOL.6: 7 residues within 4Å: Chain A: S.63, D.64, C.67, Q.68, K.69, R.317 Chain B: F.242 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.69, A:K.69, A:R.317 Water bridges: A:S.63 GOL.11: 6 residues within 4Å: Chain A: P.58 Chain B: G.25, K.26, T.166, G.167, E.247 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.25, B:E.247 Water bridges: B:G.167 GOL.12: 4 residues within 4Å: Chain B: D.261, V.262, D.303, Y.304 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.261 GOL.13: 7 residues within 4Å: Chain A: F.242 Chain B: S.63, D.64, C.67, Q.68, K.69, R.317 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.69, B:K.69, B:R.317 Water bridges: B:S.63

2 x NA: SODIUM ION(Non-functional Binders)

NA.7: 2 residues within 4Å: Chain A: M.256, N.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.259 NA.14: 2 residues within 4Å: Chain B: M.256, N.259 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, J. et al., The crystal structures of yeast Get3 suggest a mechanism for tail-anchored protein membrane insertion. Plos One (2009)

Release Date

2009-12-22

Peptides

DEHA2D07832p: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DEHA2D07832p

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