SMTL ID : 3iof.1

Crystal structure of CphA N220G mutant with inhibitor 10a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.72, R.73, C.166, H.204 Ligands: IFS.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.72, A:C.166, A:H.204

1 x IFS: bis(1-methylethyl) [2-(sulfanylmethyl)phenyl]phosphonate(Non-covalent)

IFS.2: 15 residues within 4Å: Chain A: V.21, W.41, H.70, T.71, D.72, I.104, F.107, T.108, G.111, L.112, H.147, G.173, N.174, H.204 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.21, A:W.41, A:D.72, A:I.104, A:L.112, A:L.112, A:N.174 Hydrogen bonds: A:N.174 Water bridges: A:H.70

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: F.29, G.30, S.57, K.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.57 Water bridges: A:F.29 Salt bridges: A:K.59 SO4.4: 1 residues within 4Å: Chain A: R.94 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.94 SO4.5: 4 residues within 4Å: Chain A: H.127, D.128, G.129, D.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.128, A:G.129 Salt bridges: A:H.127 SO4.6: 3 residues within 4Å: Chain A: H.209, G.210, E.212 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.210, A:E.212 Water bridges: A:E.212, A:H.216 Salt bridges: A:H.209 SO4.7: 4 residues within 4Å: Chain A: K.81, L.120, V.121, L.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.122, A:L.122 Water bridges: A:K.81 Salt bridges: A:K.81 SO4.8: 4 residues within 4Å: Chain A: E.48, K.51, L.52, R.55 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.48, A:R.55 Salt bridges: A:R.55 SO4.9: 5 residues within 4Å: Chain A: A.178, D.179, V.180, K.181, Q.226 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.179, A:V.180, A:K.181 Water bridges: A:A.182 Salt bridges: A:K.181 SO4.10: 3 residues within 4Å: Chain A: K.171, L.172, G.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.172, A:G.173 SO4.11: 2 residues within 4Å: Chain A: R.91, V.126 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.91, A:R.91, A:N.124, A:N.124, A:V.126 Salt bridges: A:R.91 SO4.12: 1 residues within 4Å: Chain A: R.47 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.47

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.13: 3 residues within 4Å: Chain A: T.132, G.136, R.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.132, A:R.139, A:R.139 GOL.14: 5 residues within 4Å: Chain A: K.32, T.132, L.133, Q.134, E.135 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.132, A:Q.134, A:E.135 Water bridges: A:Q.134, A:Q.134 GOL.15: 5 residues within 4Å: Chain A: D.130, R.139, F.141, Y.155, L.195 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.130, A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lassaux, P. et al., Mercaptophosphonate Compounds as Broad-Spectrum Inhibitors of the Metallo-beta-lactamases. J.Med.Chem. (2010)

Release Date

2010-06-23

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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