SMTL ID : 3ipy.1 (2 other biounits)

X-Ray structure of Human Deoxycytidine Kinase in complex with an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

monomer

Ligands

1 x MLT: D-MALATE(Non-covalent)

MLT.1: 8 residues within 4Å: Chain A: I.11, A.12, K.15, A.37, R.109, R.173, R.175 Ligands: B87.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.12, A:R.109 Salt bridges: A:K.15, A:K.15, A:R.109, A:R.173, A:R.173, A:R.175

2 x B87: 4-(1-benzothiophen-2-yl)-6-[4-(2-oxo-2-pyrrolidin-1-ylethyl)piperazin-1-yl]pyrimidine(Non-covalent)

B87.2: 16 residues within 4Å: Chain A: I.11, E.34, V.36, Y.67, F.77, Q.78, R.85, D.114, F.118, E.177, E.178, I.181, P.182, Y.185 Ligands: MLT.1, B87.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.118, A:I.181, A:P.182, A:Y.185 Water bridges: A:Q.78 pi-Stacking: A:Y.185 B87.3: 11 residues within 4Å: Chain A: L.63, M.66, Y.67, E.71, F.77, N.121, L.122, S.125, C.127, Y.185 Ligands: B87.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.63, A:M.66, A:Y.67, A:Y.67, A:F.77, A:F.77 Hydrogen bonds: A:S.125 Water bridges: A:Y.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jessop, T.C. et al., Lead optimization and structure-based design of potent and bioavailable deoxycytidine kinase inhibitors. Bioorg.Med.Chem.Lett. (2009)

Release Date

2010-08-18

Peptides

Deoxycytidine kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Deoxycytidine kinase

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