SMTL ID : 3iq0.1

Crystal structure of a putative Ribokinase II in complex with ATP and Mg+2 from E.coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Ligands: ATP.2 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: E.179 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: ATP.5 No protein-ligand interaction detected (PLIP)

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 21 residues within 4Å: Chain A: N.169, S.197, K.228, R.229, G.230, N.231, G.233, S.247, Y.248, V.250, E.252, P.255, T.256, A.258, G.259, F.262, N.284, G.287, A.288, V.291 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.197, A:R.229, A:G.230, A:G.233, A:E.252, A:T.256, A:G.259 Water bridges: A:N.169, A:K.228, A:A.258, A:N.284 Salt bridges: A:K.228 ATP.5: 20 residues within 4Å: Chain B: N.169, S.197, K.228, R.229, G.230, N.231, G.233, Y.248, V.250, E.252, T.256, A.258, G.259, D.260, F.262, N.284, G.287, A.288, V.291 Ligands: MG.4 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.197, B:R.229, B:G.230, B:G.233, B:E.252, B:D.260 Water bridges: B:R.104, B:N.169, B:N.169, B:S.197, B:K.228, B:G.259, B:D.260, B:N.284 Salt bridges: B:K.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Satyanarayana, L. et al., Crystal structure of a putative Ribokinase (II)in complex with ATP and Mg+2 from E.coli. To be Published

Release Date

2009-09-08

Peptides

putative Ribokinase II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

putative Ribokinase II

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