SMTL ID : 3isv.1 (2 other biounits)

Crystal structure of glutamate racemase from Listeria monocytogenes in complex with acetate ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 10 residues within 4Å: Chain A: S.13, C.42, P.43, Y.44, G.45, T.119, V.150, C.186, H.188 Ligands: CL.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.119, A:V.150 Hydrogen bonds: A:S.13, A:Y.44, A:G.45 ACT.2: 1 residues within 4Å: Chain A: R.138 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.138

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: K.5, Q.32 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:K.5, H2O.5, H2O.5, H2O.6, H2O.8 CA.4: 1 residues within 4Å: Chain A: E.140 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.140, H2O.3, H2O.5, H2O.8

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: N.76, T.77, T.119, T.122 Ligands: ACT.1 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: G.45, T.119, L.120, P.147 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Majorek, K.A. et al., Crystal structure of glutamate racemase from Listeria monocytogenes in complex with acetate ion. To be Published

Release Date

2009-09-22

Peptides

Glutamate racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate racemase

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