- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x FG3: (5-methoxy-2-{[(5-methylpyridin-2-yl)sulfonyl]carbamoyl}-1H-indol-1-yl)acetic acid(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 3 residues within 4Å:- Chain A: L.262, N.263, I.287
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.263
GOL.4: 5 residues within 4Å:- Chain A: H.44, E.189, M.195, S.196, N.199
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.44, A:E.189, A:S.196, A:N.199
GOL.5: 7 residues within 4Å:- Chain A: P.17, G.18, A.21, R.25, Q.148
- Chain B: N.176, D.178
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.176, A:P.17
- Water bridges: B:N.176, A:Q.148
GOL.17: 8 residues within 4Å:- Chain A: Q.148, R.151
- Chain B: L.147, Q.148, R.151, L.177, D.178, V.179
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:D.178, A:Q.148, A:R.151, A:R.151
- Water bridges: B:Q.148, B:R.151, B:D.178
GOL.18: 7 residues within 4Å:- Chain B: Y.201, L.202, Q.206, L.274, G.275, T.276, T.277
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.203, B:Q.206, B:T.276, B:T.277, B:T.277
- Water bridges: B:Y.201, B:Q.206
GOL.19: 8 residues within 4Å:- Chain B: P.38, T.39, M.40, F.67, V.142, V.143, L.146
- Ligands: FG3.16
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:P.38, B:F.67
- Water bridges: B:F.67
GOL.20: 4 residues within 4Å:- Chain A: R.169, A.173
- Chain B: D.112, R.115
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Water bridges: A:Q.170
- Hydrogen bonds: B:D.112, B:R.115, B:R.115
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.6: 9 residues within 4Å:- Chain A: M.109, Y.110, G.113, L.114, R.115, T.116, T.117, K.145
- Chain B: D.174
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.115, A:R.115, A:K.145, A:K.145
- Water bridges: A:D.112
EDO.7: 3 residues within 4Å:- Chain A: E.128, R.132, H.135
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.128, A:R.132
- Water bridges: A:H.135, A:D.161
EDO.8: 3 residues within 4Å:- Chain A: P.111, D.112
- Ligands: EOH.12
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.112, A:D.112
EDO.9: 7 residues within 4Å:- Chain A: P.38, T.39, M.40, Q.72, V.142, Q.164
- Ligands: FG3.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.72, A:Q.164
EDO.21: 3 residues within 4Å:- Chain B: E.10, L.11, R.94
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.11
EDO.22: 9 residues within 4Å:- Chain A: D.174
- Chain B: M.109, Y.110, G.113, L.114, R.115, T.116, T.117, K.145
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.115, B:K.145, B:K.145
- Water bridges: B:D.112
EDO.23: 5 residues within 4Å:- Chain B: A.224, T.225, E.286, I.287, G.288
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.224, B:G.227, B:G.288
- 6 x EOH: ETHANOL(Non-functional Binders)
EOH.10: 6 residues within 4Å:- Chain A: A.205, Q.206, A.209, P.243, G.244, L.274
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Q.206, A:A.209, A:L.274
- Water bridges: A:Q.206
EOH.11: 5 residues within 4Å:- Chain A: R.115, T.117
- Chain B: Q.119, P.120
- Ligands: FG3.2
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:T.117, B:Q.119
EOH.12: 1 residues within 4Å:- Ligands: EDO.8
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.112
EOH.13: 1 residues within 4Å:- Chain A: T.218
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.218, A:T.218
EOH.14: 5 residues within 4Å:- Chain A: N.176
- Chain B: P.17, G.18, A.21, I.149
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:A.21
- Water bridges: B:G.18, A:A.173
- Hydrogen bonds: A:N.176
EOH.15: 2 residues within 4Å:- Chain A: T.105, T.106
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.106
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hung, A.W. et al., Application of fragment growing and fragment linking to the discovery of inhibitors of Mycobacterium tuberculosis pantothenate synthetase. Angew.Chem.Int.Ed.Engl. (2009)
- Release Date
- 2009-10-13
- Peptides
- Pantothenate synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x FG3: (5-methoxy-2-{[(5-methylpyridin-2-yl)sulfonyl]carbamoyl}-1H-indol-1-yl)acetic acid(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x EOH: ETHANOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hung, A.W. et al., Application of fragment growing and fragment linking to the discovery of inhibitors of Mycobacterium tuberculosis pantothenate synthetase. Angew.Chem.Int.Ed.Engl. (2009)
- Release Date
- 2009-10-13
- Peptides
- Pantothenate synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B