SMTL ID : 3iul.1

apPEP_WT1 opened state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.295, T.309, R.321, Y.357, E.358 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.321, A:R.321, A:Y.357 GOL.2: 4 residues within 4Å: Chain A: R.16, G.18, R.34, W.35 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.16, A:R.16, A:W.35 Water bridges: A:G.18, A:D.31 GOL.3: 4 residues within 4Å: Chain A: E.37, D.39, F.576, T.577 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.38, A:T.575, A:T.577 Water bridges: A:D.39, A:R.40, A:T.575 GOL.4: 3 residues within 4Å: Chain A: T.552, Q.553, P.555 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.613 GOL.5: 4 residues within 4Å: Chain A: T.309, V.310, R.321 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.309, A:R.321, A:R.321 Water bridges: A:D.311 GOL.6: 3 residues within 4Å: Chain A: A.318, W.320, R.321 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.320, A:D.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Induced-fit mechanism for prolyl endopeptidase. J.Biol.Chem. (2010)

Release Date

2010-05-05

Peptides

Prolyl endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl endopeptidase

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