SMTL ID : 3iuq.1

apPEP_D622N+PP closed state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ZPR: N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL(Non-covalent)

ZPR.1: 10 residues within 4Å: Chain A: T.256, Y.461, F.464, S.541, N.542, V.567, W.582, Y.586, R.627, V.628 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.464, A:V.567, A:W.582, A:W.582, A:V.628 Hydrogen bonds: A:S.541, A:N.542, A:R.627

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: A.231, R.260, Y.262 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.233, A:R.260, A:Y.262 GOL.3: 6 residues within 4Å: Chain A: D.206, Q.207, H.233, H.234, R.235, N.254 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.235, A:R.235, A:N.254 Water bridges: A:H.233, A:N.254 GOL.4: 3 residues within 4Å: Chain A: L.370, S.425, Q.427 5 PLIP interactions: 5 interactions with chain A Water bridges: A:L.370, A:N.391, A:N.391, A:Q.427, A:Q.427

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Induced-fit mechanism for prolyl endopeptidase. J.Biol.Chem. (2010)

Release Date

2010-05-05

Peptides

Prolyl Endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl Endopeptidase

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