SMTL ID : 3ivd.1 (1 other biounit)

Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: D.14, D.61, N.93, H.194, H.233 Ligands: MN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.61, A:H.194, A:H.233, H2O.9

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: D.14, H.16, D.61, H.235 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.14, A:H.16, A:D.61, A:H.235, H2O.9

1 x URI: URIDINE(Non-covalent)

URI.3: 14 residues within 4Å: Chain A: N.93, H.94, D.97, T.157, S.159, P.198, N.352, G.354, G.355, R.357, F.376, N.378, F.448, D.454 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.352, A:R.357, A:R.357, A:N.378, A:N.378, A:D.454 Water bridges: A:N.93, A:D.97, A:S.159, A:S.159, A:Q.201, A:G.354 pi-Stacking: A:F.376, A:F.448

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: G.150, F.152, A.153, E.195, G.196, K.215 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Uridine. To be Published

Release Date

2009-09-29

Peptides

Nucleotidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleotidase

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