SMTL ID : 3iyl.2 (1 other biounit)

Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-20-2-1-2-mer

Ligands

10 x MYR: MYRISTIC ACID(Covalent)

MYR.1: 14 residues within 4Å: Chain A: G.2, N.3, I.13 Chain B: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.163, B:L.187, B:A.190, B:K.191, B:L.194, B:L.201, B:P.204, B:Y.208, B:A.211 MYR.2: 14 residues within 4Å: Chain C: G.2, N.3, I.13 Chain D: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:L.163, D:L.187, D:A.190, D:K.191, D:L.194, D:L.201, D:P.204, D:Y.208, D:A.211 MYR.3: 13 residues within 4Å: Chain E: G.2, I.13 Chain F: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:L.163, F:L.187, F:A.190, F:K.191, F:L.194, F:L.201, F:P.204, F:Y.208, F:A.211 MYR.4: 14 residues within 4Å: Chain G: G.2, N.3, I.13 Chain H: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain H Hydrophobic interactions: H:L.163, H:L.187, H:A.190, H:K.191, H:L.194, H:L.201, H:P.204, H:Y.208, H:A.211 MYR.5: 14 residues within 4Å: Chain I: G.2, N.3, I.13 Chain J: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:L.163, J:L.187, J:A.190, J:K.191, J:L.194, J:L.201, J:P.204, J:Y.208, J:A.211 MYR.6: 13 residues within 4Å: Chain K: G.2, I.13 Chain L: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain L Hydrophobic interactions: L:L.163, L:L.187, L:A.190, L:K.191, L:L.194, L:L.201, L:P.204, L:Y.208, L:A.211 MYR.7: 14 residues within 4Å: Chain M: G.2, N.3, I.13 Chain N: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain N Hydrophobic interactions: N:L.163, N:L.187, N:A.190, N:K.191, N:L.194, N:L.201, N:P.204, N:Y.208, N:A.211 MYR.8: 14 residues within 4Å: Chain O: G.2, N.3, I.13 Chain P: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain P Hydrophobic interactions: P:L.163, P:L.187, P:A.190, P:K.191, P:L.194, P:L.201, P:P.204, P:Y.208, P:A.211 MYR.9: 13 residues within 4Å: Chain Q: G.2, I.13 Chain R: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain R Hydrophobic interactions: R:L.163, R:L.187, R:A.190, R:K.191, R:L.194, R:L.201, R:P.204, R:Y.208, R:A.211 MYR.10: 14 residues within 4Å: Chain S: G.2, N.3, I.13 Chain T: L.163, M.167, L.187, A.190, K.191, L.194, C.200, L.201, P.204, Y.208, A.211 9 PLIP interactions: 9 interactions with chain T Hydrophobic interactions: T:L.163, T:L.187, T:A.190, T:K.191, T:L.194, T:L.201, T:P.204, T:Y.208, T:A.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., 3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry. Cell(Cambridge,Mass.) (2010)

Release Date

2010-05-12

Peptides

Outer capsid VP4: ABCDEFGHIJKLMNOPQRST
Core protein VP6: UV
VP1: W
VP3: XY

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Outer capsid VP4

Core protein VP6

VP1

VP3

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