SMTL ID : 3iyp.3 (3 other biounits)

The Interaction of Decay-accelerating Factor with Echovirus 7

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-6-mer

Ligands

6 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 14 residues within 4Å: Chain A: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.95, A:I.95, A:Y.146, A:Y.146, A:Y.146, A:I.183, A:I.183, A:Y.192, A:Y.192, A:F.240 Hydrogen bonds: A:S.193, A:Y.210, A:N.214 DAO.2: 14 residues within 4Å: Chain F: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:I.95, F:I.95, F:Y.146, F:Y.146, F:Y.146, F:I.183, F:I.183, F:Y.192, F:Y.192, F:F.240 Hydrogen bonds: F:S.193, F:Y.210, F:N.214 DAO.3: 14 residues within 4Å: Chain K: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 12 PLIP interactions: 12 interactions with chain K Hydrophobic interactions: K:I.95, K:I.95, K:Y.146, K:Y.146, K:Y.146, K:I.183, K:I.183, K:Y.192, K:Y.192, K:F.240 Hydrogen bonds: K:S.193, K:N.214 DAO.4: 14 residues within 4Å: Chain P: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 13 PLIP interactions: 13 interactions with chain P Hydrophobic interactions: P:I.95, P:I.95, P:Y.146, P:Y.146, P:Y.146, P:I.183, P:I.183, P:Y.192, P:Y.192, P:F.240 Hydrogen bonds: P:S.193, P:Y.210, P:N.214 DAO.5: 14 residues within 4Å: Chain U: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 13 PLIP interactions: 13 interactions with chain U Hydrophobic interactions: U:I.95, U:I.95, U:Y.146, U:Y.146, U:Y.146, U:I.183, U:I.183, U:Y.192, U:Y.192, U:F.240 Hydrogen bonds: U:S.193, U:Y.210, U:N.214 DAO.6: 14 residues within 4Å: Chain Z: I.95, F.107, M.117, I.119, Y.146, M.181, I.183, Y.192, S.193, N.194, Y.210, N.214, M.216, F.240 13 PLIP interactions: 13 interactions with chain Z Hydrophobic interactions: Z:I.95, Z:I.95, Z:Y.146, Z:Y.146, Z:Y.146, Z:I.183, Z:I.183, Z:Y.192, Z:Y.192, Z:F.240 Hydrogen bonds: Z:S.193, Z:Y.210, Z:N.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plevka, P. et al., Interaction of decay-accelerating factor with echovirus 7. J.Virol. (2010)

Release Date

2010-11-24

Peptides

Capsid protein: AFKPUZ
Polyprotein: BGLQV0
Polyprotein: CHMRW1
Polyprotein: DINSX2
Complement decay-accelerating factor: EJOTY3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
A

K
A

P
A

U
A

Z
A

B
B

G
B

L
B

Q
B

V
B

0
B

C
C

H
C

M
C

R
C

W
C

1
C

D
D

I
D

N
D

S
D

X
D

2
D

E
F

J
F

O
F

T
F

Y
F

3
F

Capsid protein

Polyprotein

Polyprotein

Polyprotein

Complement decay-accelerating factor

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