SMTL ID : 3j15.1

Model of ribosome-bound archaeal Pelota and ABCE1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)(Non-covalent)

ADP.1: 10 residues within 4Å: Chain B: Y.353, S.355, F.356, N.377, G.378, I.379, G.380, K.381, T.382, T.383 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.378, B:I.379, B:G.380, B:K.381, B:T.382, B:T.383 Salt bridges: B:K.381 ADP.2: 13 residues within 4Å: Chain B: Y.87, F.92, P.111, N.112, G.113, T.114, G.115, K.116, T.117, T.118, Q.169, P.291, G.292 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Y.87, B:P.111, B:G.113, B:G.113, B:T.114, B:G.115, B:K.116, B:T.117, B:T.117, B:T.118, B:T.118 Salt bridges: B:K.116 pi-Stacking: B:Y.87

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 12 residues within 4Å: Chain B: C.29, P.30, V.31, A.38, I.39, C.55, T.56, G.57, C.58, G.59, C.61, I.72 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.29, B:C.55, B:C.58, B:C.61 SF4.4: 11 residues within 4Å: Chain B: C.15, N.16, P.17, C.20, F.23, L.24, C.25, C.65, P.66, F.67, I.70 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.15, B:C.20, B:C.25, B:C.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becker, T. et al., Structural basis of highly conserved ribosome recycling in eukaryotes and archaea. Nature (2012)

Release Date

2012-02-22

Peptides

Protein pelota: A
ABC transporter ATP-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein pelota

ABC transporter ATP-binding protein

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