SMTL ID : 3jab.1

Domain organization and conformational plasticity of the G protein effector, PDE6

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-mer

Ligands

4 x IBM: 3-ISOBUTYL-1-METHYLXANTHINE(Non-covalent)

IBM.1: 8 residues within 4Å: Chain E: H.83, L.235, I.238, V.252, F.256, M.274, Q.287, F.290 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:V.252, E:F.256 Hydrogen bonds: E:Q.287 pi-Stacking: E:F.290 IBM.2: 7 residues within 4Å: Chain E: N.164, Q.169, L.171, S.172, L.174, I.176, Y.179 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:I.176, E:Y.179, E:Y.179 pi-Stacking: E:Y.179, E:Y.179 IBM.3: 8 residues within 4Å: Chain G: H.83, L.235, I.238, V.252, F.256, M.274, Q.287, F.290 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:V.252, G:F.256 Hydrogen bonds: G:Q.287 pi-Stacking: G:F.290 IBM.4: 7 residues within 4Å: Chain G: N.164, Q.169, L.171, S.172, L.174, I.176, Y.179 5 PLIP interactions: 5 interactions with chain G Hydrophobic interactions: G:I.176, G:Y.179, G:Y.179 pi-Stacking: G:Y.179, G:Y.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6. J.Biol.Chem. (2015)

Release Date

2015-06-10

Peptides

GafA domain of cone phosphodiesterase 6C: AB
GafB domain of phosphodiesterase 2A: CD
phosphodiesterase 5/6 chimera catalytic domain: EG
phosphodiesterase 6 gamma subunit inhibitory peptide: FH
IgG1-kappa 2E8 light chain: IK
IgG1-kappa 2E8 heavy chain: JL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
M

C
B

D
N

E
C

G
O

F
D

H
P

I
L

K
R

J
H

L
Q

GafA domain of cone phosphodiesterase 6C

GafB domain of phosphodiesterase 2A

phosphodiesterase 5/6 chimera catalytic domain

phosphodiesterase 6 gamma subunit inhibitory peptide

IgG1-kappa 2E8 light chain

IgG1-kappa 2E8 heavy chain

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