SMTL ID : 3jun.1

Crystal Structure of PhzA/B from Burkholderia cepacia R18194 in simultaneous complex with racemic 5-bromo-2-(piperidin-3-ylamino)benzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x AJD: 5-bromo-2-[(3R)-piperidin-3-ylamino]benzoic acid(Non-covalent)

AJD.1: 12 residues within 4Å: Chain A: R.58, R.61, L.90, H.93, A.94, S.97, F.101, W.104, W.106, F.144, E.160 Ligands: AKD.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.101, A:F.101, A:W.104, A:W.104 Water bridges: A:R.58, A:R.58, A:R.58, A:R.61, A:R.61, A:E.160 Salt bridges: A:R.58, A:R.61 Halogen bonds: A:L.90 AJD.3: 12 residues within 4Å: Chain B: R.58, R.61, L.90, H.93, A.94, S.97, F.101, W.104, W.106, F.144, E.160 Ligands: AKD.4 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.101, B:F.101, B:W.104, B:W.104 Water bridges: B:R.58, B:R.58 Salt bridges: B:R.58, B:R.61 Halogen bonds: B:L.90

2 x AKD: 5-bromo-2-[(3S)-piperidin-3-ylamino]benzoate(Non-covalent)

AKD.2: 9 residues within 4Å: Chain A: G.72, L.73, S.97, C.100, F.101, F.132, Q.167 Chain B: R.180 Ligands: AJD.1 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.132, B:R.180, B:R.180 Hydrogen bonds: A:Q.167, B:R.180 Salt bridges: B:R.180 AKD.4: 9 residues within 4Å: Chain A: R.180 Chain B: G.72, L.73, S.97, C.100, F.101, F.132, Q.167 Ligands: AJD.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:R.180, B:F.132 Salt bridges: A:R.180 Hydrogen bonds: B:Q.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mentel, M. et al., The Active Site of an Enzyme Can Host Both Enantiomers of a Racemic Ligand Simultaneously. Angew.Chem.Int.Ed.Engl. (2009)

Release Date

2009-09-29

Peptides

Phenazine biosynthesis protein A/B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phenazine biosynthesis protein A/B

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