SMTL ID : 3jw9.1

Crystal structure of L-methionine gamma-lyase from Citrobacter freundii with S-ethyl-cysteine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x ECX: S-ethyl-L-cysteine(Non-covalent)

ECX.1: 7 residues within 4Å: Chain A: Y.113, K.210, V.338, S.339, L.340, R.374 Chain C: Y.58 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Water bridges: A:R.374 Salt bridges: A:R.374 Hydrogen bonds: C:Y.58 ECX.3: 7 residues within 4Å: Chain B: Y.113, K.210, V.338, S.339, L.340, R.374 Chain D: Y.58 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:Y.58 Water bridges: B:R.374 Salt bridges: B:R.374 ECX.5: 7 residues within 4Å: Chain A: Y.58 Chain C: Y.113, K.210, V.338, S.339, L.340, R.374 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:Y.113, A:Y.58 Water bridges: C:R.374 Salt bridges: C:R.374 ECX.7: 7 residues within 4Å: Chain B: Y.58 Chain D: Y.113, K.210, V.338, S.339, L.340, R.374 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:Y.113, B:Y.58 Water bridges: D:R.374 Salt bridges: D:R.374

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 8 residues within 4Å: Chain A: P.191, Y.192, C.193, Q.195, R.304, Q.305, M.306, S.307 No protein-ligand interaction detected (PLIP) PEG.4: 8 residues within 4Å: Chain B: P.191, Y.192, C.193, Q.195, R.304, Q.305, M.306, S.307 No protein-ligand interaction detected (PLIP) PEG.6: 8 residues within 4Å: Chain C: P.191, Y.192, C.193, Q.195, R.304, Q.305, M.306, S.307 No protein-ligand interaction detected (PLIP) PEG.8: 8 residues within 4Å: Chain D: P.191, Y.192, C.193, Q.195, R.304, Q.305, M.306, S.307 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Revtovich, S.V. et al., Three-dimensional structures of noncovalent complexes of Citrobacter freundii methionine gamma-lyase with substrates. Biochemistry Mosc. (2011)

Release Date

2010-09-08

Peptides

Methionine gamma-lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Methionine gamma-lyase

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