SMTL ID : 3jyf.2 (2 other biounits)

The crystal structure of a 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 7 residues within 4Å: Chain A: D.16, D.61, N.101, H.210, H.242 Ligands: MN.2, EPE.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.61, A:H.210, A:H.242 MN.2: 5 residues within 4Å: Chain A: D.16, H.18, D.61, H.244 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.16, A:H.18, A:D.61, A:H.244, H2O.5

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 7 residues within 4Å: Chain A: D.61, N.101, H.102, N.105, W.172, H.242 Ligands: MN.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.101, A:N.101 Water bridges: A:N.105 Salt bridges: A:H.102, A:H.242

1 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.4: 4 residues within 4Å: Chain A: H.112, Y.122, F.137, T.138 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.112, A:Y.122, A:T.138 Water bridges: A:Y.122, A:T.138

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: R.191, Y.218 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.191, A:R.191 GOL.6: 4 residues within 4Å: Chain A: P.167, Q.168, T.171, M.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.171, A:T.171 Water bridges: A:Q.168 GOL.7: 2 residues within 4Å: Chain A: R.48, N.93 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.93 Water bridges: A:R.48, A:R.48, A:S.54, A:S.54, A:S.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, Y. et al., The crystal structure of a 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578. To be Published

Release Date

2009-09-29

Peptides

2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic protein

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