- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x NA: SODIUM ION(Non-functional Binders)
NA.3: 11 residues within 4Å:- Chain A: T.46, V.47
- Chain B: T.46, V.47
- Chain C: T.46, V.47
- Chain D: T.46, V.47
- Ligands: NA.8, NA.13, NA.18
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.47
NA.4: 7 residues within 4Å:- Chain A: T.46
- Chain B: T.46
- Chain C: T.46
- Chain D: T.46
- Ligands: NA.9, NA.14, NA.19
5 PLIP interactions:1 interactions with chain D, 1 interactions with chain B, 2 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: D:T.46, B:T.46, A:T.46, A:T.46, C:T.46
NA.5: 7 residues within 4Å:- Chain A: G.48
- Chain B: G.48
- Chain C: G.48
- Chain D: G.48
- Ligands: NA.10, NA.15, NA.20
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.48
NA.8: 11 residues within 4Å:- Chain A: T.46, V.47
- Chain B: T.46, V.47
- Chain C: T.46, V.47
- Chain D: T.46, V.47
- Ligands: NA.3, NA.13, NA.18
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.47
NA.9: 7 residues within 4Å:- Chain A: T.46
- Chain B: T.46
- Chain C: T.46
- Chain D: T.46
- Ligands: NA.4, NA.14, NA.19
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: D:T.46, D:T.46, B:T.46, A:T.46, C:T.46
NA.10: 7 residues within 4Å:- Chain A: G.48
- Chain B: G.48
- Chain C: G.48
- Chain D: G.48
- Ligands: NA.5, NA.15, NA.20
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.48
NA.13: 11 residues within 4Å:- Chain A: T.46, V.47
- Chain B: T.46, V.47
- Chain C: T.46, V.47
- Chain D: T.46, V.47
- Ligands: NA.3, NA.8, NA.18
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.46
NA.14: 7 residues within 4Å:- Chain A: T.46
- Chain B: T.46
- Chain C: T.46
- Chain D: T.46
- Ligands: NA.4, NA.9, NA.19
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: D:T.46, D:T.46, B:T.46, A:T.46, C:T.46
NA.15: 7 residues within 4Å:- Chain A: G.48
- Chain B: G.48
- Chain C: G.48
- Chain D: G.48
- Ligands: NA.5, NA.10, NA.20
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.48
NA.18: 11 residues within 4Å:- Chain A: T.46, V.47
- Chain B: T.46, V.47
- Chain C: T.46, V.47
- Chain D: T.46, V.47
- Ligands: NA.3, NA.8, NA.13
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.47
NA.19: 7 residues within 4Å:- Chain A: T.46
- Chain B: T.46
- Chain C: T.46
- Chain D: T.46
- Ligands: NA.4, NA.9, NA.14
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: D:T.46, D:T.46, B:T.46, C:T.46, A:T.46
NA.20: 7 residues within 4Å:- Chain A: G.48
- Chain B: G.48
- Chain C: G.48
- Chain D: G.48
- Ligands: NA.5, NA.10, NA.15
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.48
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Derebe, M.G. et al., Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore. Proc.Natl.Acad.Sci.USA (2011)
- Release Date
- 2011-01-12
- Peptides
- Potassium channel protein NaK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Derebe, M.G. et al., Structural studies of ion permeation and Ca2+ blockage of a bacterial channel mimicking the cyclic nucleotide-gated channel pore. Proc.Natl.Acad.Sci.USA (2011)
- Release Date
- 2011-01-12
- Peptides
- Potassium channel protein NaK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B - Membrane
-
We predict this structure to be a membrane protein.