SMTL ID : 3k1y.2 (1 other biounit)

X-ray structure of oxidoreductase from corynebacterium diphtheriae. orthorombic crystal form, northeast structural genomics consortium target cdr100d

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.20, L.21, S.22, S.25, S.26, T.27, P.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.21, A:S.22, A:S.26, A:T.27, A:T.27 SO4.2: 4 residues within 4Å: Chain A: G.128, S.129, R.131, H.132 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.128, A:S.129, A:S.129, A:S.129 Salt bridges: A:R.131, A:H.132 SO4.3: 4 residues within 4Å: Chain A: Y.146 Chain B: R.174 Chain D: R.131, H.132 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B Salt bridges: D:R.131, D:H.132, B:R.174 Hydrogen bonds: B:S.133 SO4.4: 7 residues within 4Å: Chain B: G.20, L.21, S.22, S.25, S.26, T.27, P.94 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.21, B:S.22, B:S.22, B:S.26, B:T.27, B:T.27, B:T.27 SO4.5: 5 residues within 4Å: Chain B: V.95, F.96, K.97 Chain C: T.113, Y.146 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:Y.146, B:K.97 Salt bridges: B:K.97 SO4.6: 5 residues within 4Å: Chain B: A.127, G.128, S.129, R.131, H.132 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.128, B:S.129 Salt bridges: B:R.131 SO4.7: 7 residues within 4Å: Chain C: G.20, L.21, S.22, S.25, S.26, T.27, P.94 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:L.21, C:S.22, C:S.26, C:T.27, C:T.27, C:T.27 SO4.8: 4 residues within 4Å: Chain C: G.128, S.129, R.131, H.132 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.128, C:S.129, C:S.129, C:S.129 Salt bridges: C:R.131, C:H.132 SO4.9: 4 residues within 4Å: Chain B: R.131, H.132 Chain C: Y.146 Chain D: R.174 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:S.133 Salt bridges: D:R.174, B:R.131, B:H.132 SO4.10: 7 residues within 4Å: Chain D: G.20, L.21, S.22, S.25, S.26, T.27, P.94 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:L.21, D:S.22, D:S.22, D:S.26, D:T.27, D:T.27 SO4.11: 5 residues within 4Å: Chain A: T.113, Y.146 Chain D: V.95, F.96, K.97 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.97 Salt bridges: D:K.97 SO4.12: 5 residues within 4Å: Chain D: A.127, G.128, S.129, R.131, H.132 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.128, D:S.129, D:S.129, D:H.132 Salt bridges: D:R.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzin, A. et al., Northeast Structural Genomics Consortium Target CdR100D. To be Published

Release Date

2009-10-20

Peptides

oxidoreductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
D

D
E

oxidoreductase

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