SMTL ID : 3k2k.1

Crystal structure of putative carboxypeptidase (YP_103406.1) from BURKHOLDERIA MALLEI ATCC 23344 at 2.49 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-tetramer

Ligands

16 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: K.322, Q.329, D.330, E.331 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: S.26, G.31, A.32, I.33, R.49 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: H.190, R.245, N.254, R.255 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.354, F.355 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: K.322, Q.329, D.330, E.331 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain B: S.26, G.31, A.32, I.33, R.49 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: H.190, R.245, N.254, R.255 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.354, F.355 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain C: K.322, Q.329, D.330, E.331 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain C: S.26, G.31, A.32, I.33, R.49 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain C: H.190, R.245, N.254, R.255 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain C: R.354, F.355 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain D: K.322, Q.329, D.330, E.331 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain D: S.26, G.31, A.32, I.33, R.49 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain D: H.190, R.245, N.254, R.255 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain D: R.354, F.355 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: H.138, S.139, L.142, S.166 Chain B: R.63, S.124 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.139, A:S.166, B:R.63, B:S.124, B:S.124 Water bridges: A:H.138, A:P.164 GOL.10: 6 residues within 4Å: Chain A: R.63, S.124 Chain B: H.138, S.139, L.142, S.166 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.139, B:S.166, A:R.63, A:S.124, A:S.124 Water bridges: B:H.138, B:P.164 GOL.15: 6 residues within 4Å: Chain C: H.138, S.139, L.142, S.166 Chain D: R.63, S.124 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:S.139, C:S.166, D:R.63, D:S.124, D:S.124 Water bridges: C:H.138, C:P.164 GOL.20: 6 residues within 4Å: Chain C: R.63, S.124 Chain D: H.138, S.139, L.142, S.166 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:S.139, D:S.166, C:R.63, C:S.124, C:S.124 Water bridges: D:H.138, D:P.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative carboxypeptidase (YP_103406.1) from BURKHOLDERIA MALLEI ATCC 23344 at 2.49 A resolution. To be published

Release Date

2009-11-03

Peptides

putative carboxypeptidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

putative carboxypeptidase