SMTL ID : 3k5m.1

Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x DG3: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DG3.1: 16 residues within 4Å: Chain A: D.422, Y.423, K.424, S.425, L.426, R.480, K.496, I.497, N.500, Y.503, D.550 Chain B: C.4, C.5 Chain C: G.13 Ligands: CA.2, CA.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.425, A:L.426, A:N.500 Water bridges: A:S.425, A:Y.427, A:R.480, A:K.484, A:K.496, A:N.500, A:E.596, A:E.596, A:E.596 Salt bridges: A:R.480, A:K.496, A:K.496

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.422, Y.423, D.550 Ligands: DG3.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.422, A:Y.423, A:D.550 CA.3: 4 residues within 4Å: Chain A: D.422, D.550 Chain C: G.13 Ligands: DG3.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.422, A:D.550

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structural insight into translesion synthesis by DNA Pol II. Cell(Cambridge,Mass.) (2009)

Release Date

2010-02-02

Peptides

DNA polymerase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase II

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