SMTL ID : 3kaa.2 (1 other biounit)

Structure of Tim-3 in complex with phosphatidylserine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: F.96, G.98, N.101, D.102 Ligands: PSF.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:F.96, A:G.98

1 x PSF: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE(Non-covalent)

PSF.2: 10 residues within 4Å: Chain A: W.41, S.42, Q.43, R.93, Q.95, L.99, M.100, N.101, D.102 Ligands: CA.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.41, A:Q.43, A:R.93, A:R.93, A:M.100, A:N.101, A:D.102 Salt bridges: A:R.93, A:R.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

DeKruyff, R.H. et al., T cell/transmembrane, Ig, and mucin-3 allelic variants differentially recognize phosphatidylserine and mediate phagocytosis of apoptotic cells. J.Immunol. (2010)

Release Date

2010-01-26

Peptides

Hepatitis A virus cellular receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hepatitis A virus cellular receptor 2

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