SMTL ID : 3kfk.1

Crystal structures of a group II chaperonin from Methanococcus maripaludis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 6.00 Å

Oligo State

homo-16-mer

Ligands

16 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 19 residues within 4Å: Chain A: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.422, L.451, N.452, F.454, E.468 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.40, A:D.60, A:D.60, A:G.92, A:T.93, A:T.94, A:T.94, A:T.95, A:T.95, A:G.382, A:N.452, A:E.468 AGS.2: 23 residues within 4Å: Chain B: T.38, L.39, G.40, P.41, N.59, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.451, N.452, F.454, V.466, E.468, K.473 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.40, B:D.60, B:G.92, B:T.93, B:T.94, B:T.94, B:T.95, B:T.95, B:G.382, B:E.468, B:K.473 AGS.3: 22 residues within 4Å: Chain C: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.422, L.451, N.452, F.454, V.466, E.468 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:G.40, C:D.60, C:D.60, C:G.92, C:T.93, C:T.94, C:T.94, C:T.95, C:T.95, C:G.382, C:E.468, C:E.468, C:K.473 AGS.4: 18 residues within 4Å: Chain D: T.38, L.39, G.40, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.451, N.452, V.466, E.468, K.473 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:G.40, D:D.60, D:D.60, D:G.92, D:T.93, D:T.94, D:T.94, D:T.95, D:T.95, D:G.382, D:N.452, D:E.468, D:K.473 AGS.5: 19 residues within 4Å: Chain E: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.422, L.451, N.452, F.454, E.468 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:G.40, E:D.60, E:D.60, E:G.92, E:T.93, E:T.94, E:T.94, E:T.95, E:T.95, E:G.382, E:N.452, E:E.468 AGS.6: 23 residues within 4Å: Chain F: T.38, L.39, G.40, P.41, N.59, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.451, N.452, F.454, V.466, E.468, K.473 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:G.40, F:D.60, F:G.92, F:T.93, F:T.94, F:T.94, F:T.95, F:T.95, F:G.382, F:E.468, F:K.473 AGS.7: 22 residues within 4Å: Chain G: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.422, L.451, N.452, F.454, V.466, E.468 13 PLIP interactions: 13 interactions with chain G Hydrogen bonds: G:G.40, G:D.60, G:D.60, G:G.92, G:T.93, G:T.94, G:T.94, G:T.95, G:T.95, G:G.382, G:E.468, G:E.468, G:K.473 AGS.8: 18 residues within 4Å: Chain H: T.38, L.39, G.40, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.451, N.452, V.466, E.468, K.473 13 PLIP interactions: 13 interactions with chain H Hydrogen bonds: H:G.40, H:D.60, H:D.60, H:G.92, H:T.93, H:T.94, H:T.94, H:T.95, H:T.95, H:G.382, H:N.452, H:E.468, H:K.473 AGS.9: 19 residues within 4Å: Chain I: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.422, L.451, N.452, F.454, E.468 13 PLIP interactions: 13 interactions with chain I Hydrogen bonds: I:G.40, I:D.60, I:D.91, I:G.92, I:T.93, I:T.93, I:T.94, I:T.94, I:T.95, I:T.95, I:G.382, I:N.452, I:E.468 AGS.10: 23 residues within 4Å: Chain J: T.38, L.39, G.40, P.41, N.59, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.451, N.452, F.454, V.466, E.468, K.473 13 PLIP interactions: 13 interactions with chain J Hydrogen bonds: J:G.40, J:D.60, J:D.91, J:G.92, J:T.93, J:T.93, J:T.94, J:T.94, J:T.95, J:T.95, J:G.382, J:E.468, J:K.473 AGS.11: 22 residues within 4Å: Chain K: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.422, L.451, N.452, F.454, V.466, E.468 13 PLIP interactions: 13 interactions with chain K Hydrogen bonds: K:G.40, K:D.60, K:D.91, K:G.92, K:T.93, K:T.93, K:T.94, K:T.94, K:T.95, K:T.95, K:G.382, K:E.468, K:K.473 AGS.12: 18 residues within 4Å: Chain L: T.38, L.39, G.40, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.451, N.452, V.466, E.468, K.473 12 PLIP interactions: 12 interactions with chain L Hydrogen bonds: L:G.40, L:D.60, L:D.91, L:G.92, L:T.93, L:T.94, L:T.95, L:T.95, L:G.382, L:N.452, L:E.468, L:K.473 AGS.13: 19 residues within 4Å: Chain M: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.422, L.451, N.452, F.454, E.468 13 PLIP interactions: 13 interactions with chain M Hydrogen bonds: M:G.40, M:D.60, M:D.91, M:G.92, M:T.93, M:T.93, M:T.94, M:T.94, M:T.95, M:T.95, M:G.382, M:N.452, M:E.468 AGS.14: 23 residues within 4Å: Chain N: T.38, L.39, G.40, P.41, N.59, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.451, N.452, F.454, V.466, E.468, K.473 13 PLIP interactions: 13 interactions with chain N Hydrogen bonds: N:G.40, N:D.60, N:D.91, N:G.92, N:T.93, N:T.93, N:T.94, N:T.94, N:T.95, N:T.95, N:G.382, N:E.468, N:K.473 AGS.15: 22 residues within 4Å: Chain O: T.38, L.39, G.40, P.41, N.59, D.60, G.61, D.91, G.92, T.93, T.94, T.95, T.159, G.160, G.381, G.382, L.422, L.451, N.452, F.454, V.466, E.468 13 PLIP interactions: 13 interactions with chain O Hydrogen bonds: O:G.40, O:D.60, O:D.91, O:G.92, O:T.93, O:T.93, O:T.94, O:T.94, O:T.95, O:T.95, O:G.382, O:E.468, O:K.473 AGS.16: 18 residues within 4Å: Chain P: T.38, L.39, G.40, D.60, G.61, G.90, D.91, G.92, T.93, T.94, T.95, G.381, G.382, L.451, N.452, V.466, E.468, K.473 12 PLIP interactions: 12 interactions with chain P Hydrogen bonds: P:G.40, P:D.60, P:D.91, P:G.92, P:T.93, P:T.94, P:T.95, P:T.95, P:G.382, P:N.452, P:E.468, P:K.473

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira, J.H. et al., Crystal structures of a group II chaperonin reveal the open and closed states associated with the protein folding cycle. J.Biol.Chem. (2010)

Release Date

2010-06-23

Peptides

Chaperonin: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

M
A

N
B

O
C

P
D

Chaperonin

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