- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x ME8: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-2-azanyl-4-methylsulfanyl-butanoate(Non-covalent)
- 1 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.2: 12 residues within 4Å:- Chain A: N.38, H.42, H.45, K.78, K.339, I.340, S.341, K.342, S.343
- Ligands: ME8.1, MG.3, EDO.5
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:N.38, A:N.38, A:I.340, A:K.342, A:S.343
- Water bridges: A:D.153, A:S.343, A:S.343
- Salt bridges: A:H.42, A:H.45, A:K.78, A:K.339, A:K.339, A:K.342, A:K.342
- 1 x MG: MAGNESIUM ION(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: H.181, K.339, S.341, S.343, L.344
- Ligands: POP.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.341
- Water bridges: A:K.339, A:S.343
EDO.6: 8 residues within 4Å:- Chain A: Y.47, H.330, G.331, W.332, S.370, N.371, F.372, D.374
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.47, A:G.331, A:W.332, A:F.372, A:G.376
EDO.7: 4 residues within 4Å:- Chain A: R.57, R.60, V.61, D.111
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.57, A:R.60, A:D.111, A:D.111
EDO.8: 5 residues within 4Å:- Chain A: T.158, F.231, D.232, Y.311
- Ligands: FMT.13
No protein-ligand interaction detected (PLIP)EDO.9: 6 residues within 4Å:- Chain A: E.178, K.302, D.303, L.305, K.306
- Ligands: FMT.12
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.178, A:L.305, A:K.306
EDO.10: 5 residues within 4Å:- Chain A: D.511, G.514, V.515, R.520, A.538
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.515, A:R.520
EDO.11: 5 residues within 4Å:- Chain A: T.95, S.98, S.99, K.102, R.117
No protein-ligand interaction detected (PLIP)- 4 x FMT: FORMIC ACID(Non-functional Binders)
FMT.12: 4 residues within 4Å:- Chain A: E.221, T.225, K.306
- Ligands: EDO.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.221, A:T.225
FMT.13: 4 residues within 4Å:- Chain A: L.230, K.306, Y.311
- Ligands: EDO.8
No protein-ligand interaction detected (PLIP)FMT.14: 4 residues within 4Å:- Chain A: Y.440, H.448, I.451, A.452
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.452
FMT.15: 2 residues within 4Å:- Chain A: I.451, D.455
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.458
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Larson, E.T. et al., Structure of Leishmania major methionyl-tRNA synthetase in complex with intermediate products methionyladenylate and pyrophosphate. Biochimie (2011)
- Release Date
- 2010-10-27
- Peptides
- Methionyl-tRNA synthetase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x ME8: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] (2S)-2-azanyl-4-methylsulfanyl-butanoate(Non-covalent)
- 1 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Larson, E.T. et al., Structure of Leishmania major methionyl-tRNA synthetase in complex with intermediate products methionyladenylate and pyrophosphate. Biochimie (2011)
- Release Date
- 2010-10-27
- Peptides
- Methionyl-tRNA synthetase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A