SMTL ID : 3kgl.2 (1 other biounit)

Crystal structure of procruciferin, 11S globulin from Brassica napus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: I.28, V.46, Y.48, Y.56, F.61, P.194, Y.196 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.48, A:Y.56, A:Y.56, A:Y.196 GOL.3: 7 residues within 4Å: Chain B: I.28, V.46, Y.48, Y.56, F.61, P.194, Y.196 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.48 GOL.4: 9 residues within 4Å: Chain C: I.28, V.30, V.46, Y.48, Y.56, F.61, P.194, Y.196, W.207 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.56, C:Y.196

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: H.356, Q.358, R.389 Chain C: V.227 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.358 Salt bridges: A:H.356, A:R.389 SO4.5: 6 residues within 4Å: Chain B: V.227, K.230 Chain C: H.356, Q.358, R.389, P.455 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:T.224, C:Q.358 Salt bridges: B:K.230, C:H.356, C:R.389

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tandang-Silvas, M.R. et al., Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta (2010)

Release Date

2010-04-21

Peptides

Cruciferin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Cruciferin

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