SMTL ID : 3ki9.1

Crystal structure of Staphylococcus aureus metallopeptidase (Sapep/DapE) in the Mn2+ bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.138, E.173, H.463 Ligands: MN.2, PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.138, A:E.173, A:E.173, A:H.463 MN.2: 7 residues within 4Å: Chain A: H.107, D.138, E.172, E.173, D.196 Ligands: MN.1, PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.107, A:D.138, A:D.196, A:D.196

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 13 residues within 4Å: Chain A: H.107, D.138, E.172, E.173, D.196, N.239, H.292, G.438, G.439, M.462, H.463 Ligands: MN.1, MN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.239 Salt bridges: A:H.292, A:H.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Girish, T.S. et al., Crystal structure of Staphylococcus aureus metallopeptidase (Sapep) reveals large domain motions between the manganese-bound and apo-states. J.Biol.Chem. (2010)

Release Date

2010-07-07

Peptides

Putative dipeptidase SACOL1801: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative dipeptidase SACOL1801

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