SMTL ID : 3kip.1 (2 other biounits)

Crystal structure of type-II 3-dehydroquinase from C. albicans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-12-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.90, A:H.116, A:I.117, A:T.118, A:T.118 SO4.2: 2 residues within 4Å: Chain A: R.81 Chain B: N.26 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.26 Salt bridges: A:R.81 SO4.4: 4 residues within 4Å: Chain B: N.90, H.116, I.117, T.118 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.90, B:I.117, B:T.118 SO4.5: 6 residues within 4Å: Chain C: N.90, H.116, I.117, T.118, V.120, R.123 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.90, C:I.117, C:T.118, C:R.123 Salt bridges: C:H.116 SO4.6: 4 residues within 4Å: Chain D: N.90, H.116, I.117, T.118 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.90, D:I.117, D:T.118, D:T.118 SO4.8: 4 residues within 4Å: Chain E: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.90, E:N.90, E:H.116, E:I.117, E:T.118 SO4.9: 4 residues within 4Å: Chain F: N.90, H.116, I.117, T.118 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:N.90, F:I.117, F:T.118 Salt bridges: F:H.116 SO4.10: 4 residues within 4Å: Chain G: N.90, H.116, I.117, T.118 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:N.90, G:I.117, G:T.118 SO4.12: 4 residues within 4Å: Chain H: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:N.90, H:N.90, H:I.117, H:T.118 Salt bridges: H:H.116 SO4.13: 6 residues within 4Å: Chain I: Y.36, N.90, H.116, I.117, T.118, R.123 7 PLIP interactions: 7 interactions with chain I Hydrogen bonds: I:Y.36, I:N.90, I:I.117, I:T.118, I:T.118, I:R.123 Salt bridges: I:H.116 SO4.14: 4 residues within 4Å: Chain J: N.90, H.116, I.117, T.118 5 PLIP interactions: 5 interactions with chain J Hydrogen bonds: J:N.90, J:N.90, J:I.117, J:T.118 Salt bridges: J:H.116 SO4.16: 4 residues within 4Å: Chain K: N.90, H.116, I.117, T.118 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:N.90, K:H.116, K:I.117, K:T.118

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: E.69, T.97, S.98 Chain B: E.69, T.97, S.98 Chain C: E.69, T.97, S.98 7 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 4 interactions with chain A Hydrogen bonds: B:T.97, C:T.97, C:T.97, A:E.69, A:T.97, A:T.97 Water bridges: A:V.99 TRS.7: 9 residues within 4Å: Chain D: E.69, T.97, S.98 Chain E: E.69, T.97, S.98 Chain F: E.69, T.97, S.98 6 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F, 2 interactions with chain E Hydrogen bonds: D:E.69, D:T.97, F:T.97, E:T.97, E:T.97 Water bridges: F:V.99 TRS.11: 10 residues within 4Å: Chain G: E.69, T.97, S.98 Chain H: E.69, T.97, S.98 Chain I: E.69, Y.94, T.97, S.98 6 PLIP interactions: 2 interactions with chain I, 3 interactions with chain G, 1 interactions with chain H Hydrogen bonds: I:T.97, I:T.97, G:E.69, G:T.97, H:T.97 Water bridges: G:V.99 TRS.15: 12 residues within 4Å: Chain J: E.69, Y.94, T.97, S.98 Chain K: E.69, Y.94, T.97, S.98 Chain L: E.69, Y.94, T.97, S.98 6 PLIP interactions: 2 interactions with chain J, 2 interactions with chain L, 2 interactions with chain K Hydrogen bonds: J:T.97, J:T.97, L:E.69, L:T.97, K:T.97, K:T.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trapani, S. et al., Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-05-12

Peptides

3-dehydroquinase, type II: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

3-dehydroquinase, type II

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