SMTL ID : 3klj.1

Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: L.15, G.16, A.17, G.18, P.19, A.20, I.38, N.39, S.40, E.41, R.48, P.49, E.83, F.84, A.85, A.111, S.112, G.113, S.114, L.130, Y.131, L.157, N.232, F.235, G.264, D.265, G.275, L.276, I.277, A.280, K.308 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:R.48, A:L.130, A:L.157, A:L.157 Hydrogen bonds: A:A.17, A:A.20, A:G.21, A:N.39, A:S.40, A:E.41, A:E.41, A:R.48, A:A.85, A:A.85, A:S.114, A:Y.131, A:D.265, A:G.275, A:G.275, A:I.277 Water bridges: A:A.17, A:G.18, A:E.41, A:G.113, A:V.266, A:N.278, A:A.280, A:K.308, A:K.308 Salt bridges: A:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishikawa, K. et al., Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum: a key component of the dioxygen scavenging system in obligatory anaerobes. Proteins (2010)

Release Date

2010-02-16

Peptides

NAD(FAD)-dependent dehydrogenase, NirB-family (N-terminal domain): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD(FAD)-dependent dehydrogenase, NirB-family (N-terminal domain)