SMTL ID : 3kly.1

Pentameric formate channel

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-pentamer

Ligands

16 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 8 residues within 4Å: Chain A: W.179, F.268, L.275, I.276 Chain B: K.32, L.36, S.39, T.84 Ligand excluded by PLIP BOG.2: 9 residues within 4Å: Chain A: K.32, S.39, I.83, T.84 Chain E: L.176, W.179, F.268, M.271, L.275 Ligand excluded by PLIP BOG.3: 14 residues within 4Å: Chain B: V.81, V.82, G.86, E.87, L.88, T.90, S.91, S.92, V.93, V.178, F.182, G.265, F.268, V.269 Ligand excluded by PLIP BOG.4: 9 residues within 4Å: Chain B: L.69, L.72, M.192, I.195, L.196 Chain C: L.72, I.195 Ligands: BOG.5, BOG.9 Ligand excluded by PLIP BOG.5: 10 residues within 4Å: Chain A: L.68, L.72, M.192, I.195, L.196 Chain B: L.69, L.72, I.195 Ligands: BOG.4, BOG.16 Ligand excluded by PLIP BOG.6: 8 residues within 4Å: Chain B: I.125, V.128, F.129, P.217, G.221, Y.224, F.225, F.246 Ligand excluded by PLIP BOG.7: 3 residues within 4Å: Chain B: H.158, T.159, F.160 Ligand excluded by PLIP BOG.8: 9 residues within 4Å: Chain B: V.82, I.83, T.181, F.182, A.184, R.185, S.186, L.187, K.190 Ligand excluded by PLIP BOG.9: 9 residues within 4Å: Chain C: L.72, M.192, I.195, L.196 Chain D: L.69, V.191, I.195 Ligands: BOG.4, BOG.13 Ligand excluded by PLIP BOG.10: 6 residues within 4Å: Chain C: Q.153, N.237, A.239, Q.240, A.242, D.243 Ligand excluded by PLIP BOG.11: 8 residues within 4Å: Chain C: I.125, V.128, F.129, P.217, G.221, Y.224, F.225, F.246 Ligand excluded by PLIP BOG.12: 14 residues within 4Å: Chain D: V.81, V.82, G.86, E.87, L.88, T.90, S.91, S.92, V.93, W.113, C.175, V.178, G.265, V.269 Ligand excluded by PLIP BOG.13: 7 residues within 4Å: Chain D: L.69, L.72, M.192, I.195, L.196 Chain E: L.72 Ligands: BOG.9 Ligand excluded by PLIP BOG.14: 13 residues within 4Å: Chain E: V.81, V.82, G.86, E.87, L.88, T.90, S.91, S.92, L.96, C.175, V.178, G.265, V.269 Ligand excluded by PLIP BOG.15: 5 residues within 4Å: Chain E: V.93, L.94, V.97, F.182, W.272 Ligand excluded by PLIP BOG.16: 8 residues within 4Å: Chain A: L.69, V.191 Chain E: L.69, L.72, M.192, I.195, L.196 Ligands: BOG.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waight, A.B. et al., Structure and mechanism of a pentameric formate channel. Nat.Struct.Mol.Biol. (2010)

Release Date

2009-12-15

Peptides

Putative formate transporter 1: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Putative formate transporter 1

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