SMTL ID : 3km5.1 (1 other biounit)

Crystal Structure Analysis of the K2 Cleaved Adhesin Domain of Lys-gingipain (Kgp)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.25, D.27, D.29, Q.31, N.67 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.25, A:D.27, A:D.29, A:Q.31, H2O.1 CA.2: 5 residues within 4Å: Chain A: T.8, E.10, G.48, N.51, D.172 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.8, A:E.10, A:N.51, A:D.172, H2O.1

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: T.6, E.7, T.8, F.9, E.10, S.11 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.6, A:T.8, A:F.9, A:S.11, A:S.11, A:S.11

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 4 residues within 4Å: Chain A: G.30, Q.31, G.32, L.34 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.32 Water bridges: A:Q.31, A:W.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, N. et al., Structure determination and analysis of a haemolytic gingipain adhesin domain from Porphyromonas gingivalis. Mol.Microbiol. (2010)

Release Date

2010-03-31

Peptides

Lysine specific cysteine protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine specific cysteine protease

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