SMTL ID : 3kma.1

Crystal Structure of vSET under Condition A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: N.3, R.5, E.31, E.32 Chain B: M.1, F.2, N.3 Ligands: GOL.5 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.3, A:R.5 Water bridges: A:D.4, A:R.5, A:E.32, A:E.32, B:F.2, B:F.2 GOL.5: 10 residues within 4Å: Chain A: M.1, F.2, N.3, F.64 Chain B: N.3, E.31, E.32, G.63, F.64 Ligands: GOL.1 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Water bridges: A:D.4, B:D.4, B:E.31, B:E.31 Hydrogen bonds: B:N.3, B:E.32

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: Y.50 Chain B: R.38 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Water bridges: B:V.37, B:R.38, B:R.38, A:Y.50 Salt bridges: B:R.38 SO4.3: 3 residues within 4Å: Chain A: I.36, R.38 Chain B: Y.50 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.50 Water bridges: A:R.38 Salt bridges: A:R.38

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: W.43, G.44 Chain B: W.43, G.44 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, H. et al., Dimerization of a viral SET protein endows its function. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-11-10

Peptides

A612L protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

A612L protein

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