SMTL ID : 3knt.1 (4 other biounits)

Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine glycosylase/lyase in complex with 15mer DNA containing 8-oxoguanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: V.120, I.123, I.126 Chain E: C.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.123, A:I.126 NA.2: 5 residues within 4Å: Chain B: V.120, I.123, K.124, I.126 Chain G: C.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.126, B:I.126 NA.3: 4 residues within 4Å: Chain C: V.120, I.123, I.126 Chain I: C.11 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:I.123, C:I.126 NA.4: 4 residues within 4Å: Chain D: V.120, I.123, I.126 Chain K: C.11 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:V.120, D:I.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faucher, F. et al., The C-terminal Lysine of Ogg2 DNA Glycosylases is a Major Molecular Determinant for Guanine/8-Oxoguanine Distinction. J.Mol.Biol. (2010)

Release Date

2010-02-02

Peptides

N-glycosylase/DNA lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

N-glycosylase/DNA lyase

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