SMTL ID : 3kog.1

Crystal structure of Putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482 at 1.85 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain A: V.140 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.143, A:N.143, A:N.143, A:N.160 ACT.2: 4 residues within 4Å: Chain A: E.102, E.103, S.104, S.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.103 ACT.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: E.89, V.90, T.91, S.138, Y.159, V.213, S.215 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.91, A:T.91, A:S.138 Water bridges: A:E.89, A:E.89, A:E.89, A:Y.159, A:Y.194, A:S.215 GOL.5: 4 residues within 4Å: Chain A: D.33, V.34, T.35, Q.36 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.33, A:V.34, A:Q.36, A:Q.36 Water bridges: A:T.35, A:T.35, A:S.37

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.6: 4 residues within 4Å: Chain A: P.78, Q.84, D.186, M.188 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.186 Hydrogen bonds: A:Q.84 Water bridges: A:A.79, A:Q.84 MRD.7: 4 residues within 4Å: Chain A: S.57, E.58, S.59, T.76 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482 at 1.85 A resolution. To be published

Release Date

2009-12-01

Peptides

Putative pore-forming toxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative pore-forming toxin