SMTL ID : 3kpf.1 (2 other biounits)

X-ray structure of the mutant Lys300Met of polyamine oxidase from Zea mays

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: V.10, G.11, G.13, M.14, S.15, L.34, E.35, A.36, T.37, G.42, R.43, M.44, L.56, G.57, A.58, N.59, W.60, K.235, V.236, V.237, S.265, A.266, V.270, L.275, I.276, Y.298, M.300, W.393, F.398, Y.399, T.402, F.403, G.429, E.430, G.438, Y.439, V.440, A.443 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:R.43, A:Y.298, A:W.393 Hydrogen bonds: A:G.13, A:S.15, A:S.15, A:A.36, A:G.41, A:R.43, A:N.59, A:W.60, A:W.60, A:E.62, A:V.237, A:V.237, A:Y.399, A:E.430, A:G.438, A:V.440 Water bridges: A:M.14, A:G.16, A:R.43, A:R.43, A:M.44, A:E.62, A:Y.205, A:S.267, A:S.267 Salt bridges: A:R.43, A:R.43 pi-Stacking: A:F.403

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: V.64, N.65, W.73, N.77, Y.197 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.64, A:W.73 Hydrogen bonds: A:N.77

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.112 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 2 residues within 4Å: Chain A: K.46, N.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.53 Salt bridges: A:K.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorillo, A. et al., The crystal structure of the mutant K300M of polyamine oxidase from ZEA MAYS unveils the role of LYS300 in catalysis. To be Published

Release Date

2010-11-17

Peptides

Polyamine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyamine oxidase

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