SMTL ID : 3kro.2 (2 other biounits)

Mint heterotetrameric geranyl pyrophosphate synthase in complex with magnesium, IPP, and DMASPP (II)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

IPE.1: 8 residues within 4Å: Chain A: G.43, K.44, V.46, R.47, H.76, L.185, F.217, I.290 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.46, A:L.185, A:F.217, A:I.290 Hydrogen bonds: A:K.44 Water bridges: A:K.44, A:R.45, A:R.47, A:R.47 Salt bridges: A:R.47, A:H.76

1 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.2: 7 residues within 4Å: Chain A: L.80, D.83, D.89, R.94, K.180 Ligands: MG.3, MG.4 6 PLIP interactions: 6 interactions with chain A Water bridges: A:D.83, A:D.89, A:Q.156, A:D.159 Salt bridges: A:R.94, A:K.180

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.83, D.89 Ligands: PPV.2, MG.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.83, A:D.89, H2O.1, H2O.1, H2O.1 MG.4: 7 residues within 4Å: Chain A: D.83, D.84, D.89, D.91, R.94 Ligands: PPV.2, MG.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.83, A:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, T.-H. et al., Structure of a heterotetrameric geranyl pyrophosphate synthase from mint (Mentha piperita) reveals intersubunit regulation. Plant Cell (2010)

Release Date

2010-02-23

Peptides

Geranyl diphosphate synthase large subunit: A
Geranyl diphosphate synthase small subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranyl diphosphate synthase large subunit

Geranyl diphosphate synthase small subunit

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