- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x URF: 5-FLUOROURACIL(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 8 residues within 4Å:- Chain A: G.26, R.30, R.91, I.92, G.93, T.94
- Chain B: R.48
- Ligands: R2B.3
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:G.26, A:D.27, A:T.94, A:E.198
- Salt bridges: A:R.30, A:R.91, B:R.48
SO4.5: 8 residues within 4Å:- Chain A: R.48
- Chain B: G.26, R.30, R.91, I.92, G.93, T.94
- Ligands: R2B.6
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:G.26, B:D.27, B:I.92, B:T.94
- Salt bridges: B:R.30, B:R.91, A:R.48
SO4.8: 9 residues within 4Å:- Chain C: G.26, R.30, R.91, I.92, G.93, T.94, E.198
- Chain D: R.48
- Ligands: R2B.9
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:G.26, C:D.27, C:I.92, C:T.94
- Salt bridges: C:R.30, C:R.91, D:R.48
SO4.11: 8 residues within 4Å:- Chain C: R.48
- Chain D: G.26, R.30, R.91, I.92, G.93, T.94
- Ligands: R2B.12
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:G.26, D:D.27, D:T.94, D:E.198
- Salt bridges: D:R.30, D:R.91, C:R.48
SO4.14: 10 residues within 4Å:- Chain E: G.26, D.27, R.30, R.91, I.92, G.93, T.94, E.198
- Chain F: R.48
- Ligands: R2B.15
7 PLIP interactions:6 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:G.26, E:D.27, E:I.92, E:T.94
- Salt bridges: E:R.30, E:R.91, F:R.48
SO4.17: 8 residues within 4Å:- Chain E: R.48
- Chain F: G.26, R.30, R.91, I.92, G.93, T.94
- Ligands: R2B.18
7 PLIP interactions:6 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:G.26, F:D.27, F:T.94, F:E.198
- Salt bridges: F:R.30, F:R.91, E:R.48
- 6 x R2B: 1,4-anhydro-D-erythro-pent-1-enitol(Non-covalent)
R2B.3: 10 residues within 4Å:- Chain A: I.69, R.91, T.94, F.162, E.196, M.197, E.198
- Chain B: H.8
- Ligands: URF.1, SO4.2
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:T.94, A:E.196, A:M.197, A:E.198, B:H.8
- Water bridges: B:R.48, B:R.48
R2B.6: 12 residues within 4Å:- Chain A: F.7, H.8, R.48
- Chain B: I.69, R.91, T.94, F.162, E.196, M.197, E.198
- Ligands: URF.4, SO4.5
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:T.94, B:E.196, B:E.196, B:M.197, B:E.198, A:H.8
- Water bridges: A:R.48, A:R.48
R2B.9: 12 residues within 4Å:- Chain C: I.69, R.91, T.94, F.162, E.196, M.197, E.198
- Chain D: F.7, H.8, R.48
- Ligands: URF.7, SO4.8
8 PLIP interactions:4 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:H.8, D:R.48, C:R.91, C:E.196, C:M.197, C:E.198
- Water bridges: D:R.48, D:R.48
R2B.12: 11 residues within 4Å:- Chain C: F.7, H.8
- Chain D: I.69, R.91, T.94, F.162, E.196, M.197, E.198
- Ligands: URF.10, SO4.11
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:H.8, D:E.196, D:M.197, D:E.198
R2B.15: 11 residues within 4Å:- Chain E: I.69, R.91, T.94, F.162, E.196, M.197, E.198
- Chain F: F.7, H.8
- Ligands: URF.13, SO4.14
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:R.91, E:E.196, E:E.196, E:M.197, E:E.198, F:H.8
R2B.18: 10 residues within 4Å:- Chain E: H.8
- Chain F: I.69, R.91, T.94, F.162, E.196, M.197, E.198
- Ligands: URF.16, SO4.17
8 PLIP interactions:5 interactions with chain F, 3 interactions with chain E- Hydrogen bonds: F:R.91, F:T.94, F:E.196, F:M.197, F:E.198, E:H.8
- Water bridges: E:R.48, E:R.48
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paul, D. et al., Glycal formation in crystals of uridine phosphorylase. Biochemistry (2010)
- Release Date
- 2010-04-28
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x URF: 5-FLUOROURACIL(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x R2B: 1,4-anhydro-D-erythro-pent-1-enitol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paul, D. et al., Glycal formation in crystals of uridine phosphorylase. Biochemistry (2010)
- Release Date
- 2010-04-28
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F