SMTL ID : 3kwo.1

Crystal Structure of Putative Bacterioferritin from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-12-mer

Ligands

72 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 4 residues within 4Å: Chain A: E.93, E.96 Ligands: ACY.9, ZN.15 Ligand excluded by PLIP ACY.2: 6 residues within 4Å: Chain A: M.76, K.83 Chain C: Q.72 Ligands: ACY.5, ACY.32, ZN.39 Ligand excluded by PLIP ACY.3: 6 residues within 4Å: Chain A: E.41, E.44, K.45, E.48 Ligands: ACY.4, ZN.13 Ligand excluded by PLIP ACY.4: 5 residues within 4Å: Chain A: E.41, E.44 Ligands: ACY.3, ZN.12, ACY.21 Ligand excluded by PLIP ACY.5: 8 residues within 4Å: Chain A: H.19, V.22 Chain C: T.70, C.71, Q.72 Ligands: ACY.2, ACY.32, ZN.39 Ligand excluded by PLIP ACY.6: 7 residues within 4Å: Chain A: T.70, C.71, Q.72 Chain C: H.19, V.22, K.23 Ligands: ZN.16 Ligand excluded by PLIP ACY.7: 4 residues within 4Å: Chain A: D.87 Chain B: C.150 Chain C: K.67 Ligands: ZN.31 Ligand excluded by PLIP ACY.8: 3 residues within 4Å: Chain A: M.141, T.145 Chain G: F.37 Ligand excluded by PLIP ACY.9: 3 residues within 4Å: Chain A: E.96 Ligands: ACY.1, ZN.15 Ligand excluded by PLIP ACY.19: 6 residues within 4Å: Chain B: E.41, E.44, K.45, E.48 Ligands: ACY.22, ZN.28 Ligand excluded by PLIP ACY.20: 7 residues within 4Å: Chain B: T.70, C.71, Q.72 Chain H: H.19, V.22, K.83 Ligands: ZN.29 Ligand excluded by PLIP ACY.21: 9 residues within 4Å: Chain A: F.37, H.40, E.41, E.44 Chain B: K.137, M.141 Ligands: ACY.4, ZN.11, ZN.12 Ligand excluded by PLIP ACY.22: 4 residues within 4Å: Chain B: E.41, E.44 Ligands: ACY.19, ZN.25 Ligand excluded by PLIP ACY.32: 6 residues within 4Å: Chain A: V.84, A.85 Chain C: C.71 Ligands: ACY.2, ACY.5, ZN.39 Ligand excluded by PLIP ACY.33: 5 residues within 4Å: Chain C: E.41, E.44 Ligands: ACY.34, ACY.35, ZN.36 Ligand excluded by PLIP ACY.34: 8 residues within 4Å: Chain C: F.37, H.40, E.41, E.44 Chain I: K.137 Ligands: ACY.33, ZN.36, ZN.37 Ligand excluded by PLIP ACY.35: 6 residues within 4Å: Chain C: E.41, E.44, E.48 Ligands: ACY.33, ZN.36, ZN.40 Ligand excluded by PLIP ACY.41: 3 residues within 4Å: Chain B: S.120 Chain D: E.114, E.117 Ligand excluded by PLIP ACY.42: 4 residues within 4Å: Chain D: E.41, E.44 Ligands: ACY.43, ZN.52 Ligand excluded by PLIP ACY.43: 7 residues within 4Å: Chain D: E.41, E.44, K.45, E.48 Ligands: ACY.42, ZN.52, ZN.54 Ligand excluded by PLIP ACY.44: 6 residues within 4Å: Chain D: H.40 Chain J: E.59 Chain L: K.137, W.140 Ligands: ZN.50, ZN.51 Ligand excluded by PLIP ACY.45: 8 residues within 4Å: Chain D: T.70, C.71, Q.72 Chain J: H.19, V.22, K.23 Ligands: ACY.46, ZN.53 Ligand excluded by PLIP ACY.46: 5 residues within 4Å: Chain D: C.71, Q.72 Chain J: M.76 Ligands: ACY.45, ZN.53 Ligand excluded by PLIP ACY.47: 3 residues within 4Å: Chain B: K.67 Chain D: C.150 Ligands: ZN.110 Ligand excluded by PLIP ACY.56: 4 residues within 4Å: Chain E: E.93, E.96 Ligands: ACY.64, ZN.70 Ligand excluded by PLIP ACY.57: 6 residues within 4Å: Chain E: M.76, K.83 Chain G: Q.72 Ligands: ACY.60, ACY.87, ZN.94 Ligand excluded by PLIP ACY.58: 6 residues within 4Å: Chain E: E.41, E.44, K.45, E.48 Ligands: ACY.59, ZN.68 Ligand excluded by PLIP ACY.59: 5 residues within 4Å: Chain E: E.41, E.44 Ligands: ACY.58, ZN.67, ACY.76 Ligand excluded by PLIP ACY.60: 8 residues within 4Å: Chain E: H.19, V.22 Chain G: T.70, C.71, Q.72 Ligands: ACY.57, ACY.87, ZN.94 Ligand excluded by PLIP ACY.61: 7 residues within 4Å: Chain E: T.70, C.71, Q.72 Chain G: H.19, V.22, K.23 Ligands: ZN.71 Ligand excluded by PLIP ACY.62: 4 residues within 4Å: Chain E: D.87 Chain F: C.150 Chain G: K.67 Ligands: ZN.86 Ligand excluded by PLIP ACY.63: 3 residues within 4Å: Chain E: M.141, T.145 Chain K: F.37 Ligand excluded by PLIP ACY.64: 3 residues within 4Å: Chain E: E.96 Ligands: ACY.56, ZN.70 Ligand excluded by PLIP ACY.74: 6 residues within 4Å: Chain F: E.41, E.44, K.45, E.48 Ligands: ACY.77, ZN.83 Ligand excluded by PLIP ACY.75: 7 residues within 4Å: Chain F: T.70, C.71, Q.72 Chain L: H.19, V.22, K.83 Ligands: ZN.84 Ligand excluded by PLIP ACY.76: 9 residues within 4Å: Chain E: F.37, H.40, E.41, E.44 Chain F: K.137, M.141 Ligands: ACY.59, ZN.66, ZN.67 Ligand excluded by PLIP ACY.77: 4 residues within 4Å: Chain F: E.41, E.44 Ligands: ACY.74, ZN.80 Ligand excluded by PLIP ACY.87: 6 residues within 4Å: Chain E: V.84, A.85 Chain G: C.71 Ligands: ACY.57, ACY.60, ZN.94 Ligand excluded by PLIP ACY.88: 5 residues within 4Å: Chain G: E.41, E.44 Ligands: ACY.89, ACY.90, ZN.91 Ligand excluded by PLIP ACY.89: 8 residues within 4Å: Chain A: K.137 Chain G: F.37, H.40, E.41, E.44 Ligands: ACY.88, ZN.91, ZN.92 Ligand excluded by PLIP ACY.90: 6 residues within 4Å: Chain G: E.41, E.44, E.48 Ligands: ACY.88, ZN.91, ZN.95 Ligand excluded by PLIP ACY.96: 3 residues within 4Å: Chain F: S.120 Chain H: E.114, E.117 Ligand excluded by PLIP ACY.97: 4 residues within 4Å: Chain H: E.41, E.44 Ligands: ACY.98, ZN.107 Ligand excluded by PLIP ACY.98: 7 residues within 4Å: Chain H: E.41, E.44, K.45, E.48 Ligands: ACY.97, ZN.107, ZN.109 Ligand excluded by PLIP ACY.99: 6 residues within 4Å: Chain B: E.59 Chain D: K.137, W.140 Chain H: H.40 Ligands: ZN.105, ZN.106 Ligand excluded by PLIP ACY.100: 8 residues within 4Å: Chain B: H.19, V.22, K.23 Chain H: T.70, C.71, Q.72 Ligands: ACY.101, ZN.108 Ligand excluded by PLIP ACY.101: 5 residues within 4Å: Chain B: M.76 Chain H: C.71, Q.72 Ligands: ACY.100, ZN.108 Ligand excluded by PLIP ACY.102: 3 residues within 4Å: Chain F: K.67 Chain H: C.150 Ligands: ZN.165 Ligand excluded by PLIP ACY.111: 4 residues within 4Å: Chain I: E.93, E.96 Ligands: ACY.119, ZN.125 Ligand excluded by PLIP ACY.112: 6 residues within 4Å: Chain I: M.76, K.83 Chain K: Q.72 Ligands: ACY.115, ACY.142, ZN.149 Ligand excluded by PLIP ACY.113: 6 residues within 4Å: Chain I: E.41, E.44, K.45, E.48 Ligands: ACY.114, ZN.123 Ligand excluded by PLIP ACY.114: 5 residues within 4Å: Chain I: E.41, E.44 Ligands: ACY.113, ZN.122, ACY.131 Ligand excluded by PLIP ACY.115: 8 residues within 4Å: Chain I: H.19, V.22 Chain K: T.70, C.71, Q.72 Ligands: ACY.112, ACY.142, ZN.149 Ligand excluded by PLIP ACY.116: 7 residues within 4Å: Chain I: T.70, C.71, Q.72 Chain K: H.19, V.22, K.23 Ligands: ZN.126 Ligand excluded by PLIP ACY.117: 4 residues within 4Å: Chain I: D.87 Chain J: C.150 Chain K: K.67 Ligands: ZN.141 Ligand excluded by PLIP ACY.118: 3 residues within 4Å: Chain C: F.37 Chain I: M.141, T.145 Ligand excluded by PLIP ACY.119: 3 residues within 4Å: Chain I: E.96 Ligands: ACY.111, ZN.125 Ligand excluded by PLIP ACY.129: 6 residues within 4Å: Chain J: E.41, E.44, K.45, E.48 Ligands: ACY.132, ZN.138 Ligand excluded by PLIP ACY.130: 7 residues within 4Å: Chain D: H.19, V.22, K.83 Chain J: T.70, C.71, Q.72 Ligands: ZN.139 Ligand excluded by PLIP ACY.131: 9 residues within 4Å: Chain I: F.37, H.40, E.41, E.44 Chain J: K.137, M.141 Ligands: ACY.114, ZN.121, ZN.122 Ligand excluded by PLIP ACY.132: 4 residues within 4Å: Chain J: E.41, E.44 Ligands: ACY.129, ZN.135 Ligand excluded by PLIP ACY.142: 6 residues within 4Å: Chain I: V.84, A.85 Chain K: C.71 Ligands: ACY.112, ACY.115, ZN.149 Ligand excluded by PLIP ACY.143: 5 residues within 4Å: Chain K: E.41, E.44 Ligands: ACY.144, ACY.145, ZN.146 Ligand excluded by PLIP ACY.144: 8 residues within 4Å: Chain E: K.137 Chain K: F.37, H.40, E.41, E.44 Ligands: ACY.143, ZN.146, ZN.147 Ligand excluded by PLIP ACY.145: 6 residues within 4Å: Chain K: E.41, E.44, E.48 Ligands: ACY.143, ZN.146, ZN.150 Ligand excluded by PLIP ACY.151: 3 residues within 4Å: Chain J: S.120 Chain L: E.114, E.117 Ligand excluded by PLIP ACY.152: 4 residues within 4Å: Chain L: E.41, E.44 Ligands: ACY.153, ZN.162 Ligand excluded by PLIP ACY.153: 7 residues within 4Å: Chain L: E.41, E.44, K.45, E.48 Ligands: ACY.152, ZN.162, ZN.164 Ligand excluded by PLIP ACY.154: 6 residues within 4Å: Chain F: E.59 Chain H: K.137, W.140 Chain L: H.40 Ligands: ZN.160, ZN.161 Ligand excluded by PLIP ACY.155: 8 residues within 4Å: Chain F: H.19, V.22, K.23 Chain L: T.70, C.71, Q.72 Ligands: ACY.156, ZN.163 Ligand excluded by PLIP ACY.156: 5 residues within 4Å: Chain F: M.76 Chain L: C.71, Q.72 Ligands: ACY.155, ZN.163 Ligand excluded by PLIP ACY.157: 3 residues within 4Å: Chain J: K.67 Chain L: C.150 Ligands: ZN.55 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 7 residues within 4Å: Chain A: L.34, Q.35, F.36, F.37 Chain B: M.141, T.145 Ligands: BU1.24 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.34, A:F.37 Water bridges: A:S.38, B:Y.42, B:S.138 GOL.23: 3 residues within 4Å: Chain B: K.99, Q.100, E.103 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.99, B:K.99, B:E.103 GOL.65: 7 residues within 4Å: Chain E: L.34, Q.35, F.36, F.37 Chain F: M.141, T.145 Ligands: BU1.79 5 PLIP interactions: 2 interactions with chain F, 3 interactions with chain E Water bridges: F:Y.42, F:S.138, E:S.38 Hydrogen bonds: E:L.34, E:F.37 GOL.78: 3 residues within 4Å: Chain F: K.99, Q.100, E.103 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:K.99, F:K.99, F:E.103 GOL.120: 7 residues within 4Å: Chain I: L.34, Q.35, F.36, F.37 Chain J: M.141, T.145 Ligands: BU1.134 5 PLIP interactions: 2 interactions with chain J, 3 interactions with chain I Water bridges: J:Y.42, J:S.138, I:S.38 Hydrogen bonds: I:L.34, I:F.37 GOL.133: 3 residues within 4Å: Chain J: K.99, Q.100, E.103 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:K.99, J:K.99, J:E.103

78 x ZN: ZINC ION(Non-covalent)

ZN.11: 7 residues within 4Å: Chain A: H.28, H.40 Chain B: M.141 Chain C: E.59 Ligands: ZN.12, ACY.21, ZN.38 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.40, H2O.89, H2O.183 ZN.12: 5 residues within 4Å: Chain A: E.41, E.44 Ligands: ACY.4, ZN.11, ACY.21 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.41, A:E.41, A:E.44 ZN.13: 2 residues within 4Å: Chain A: E.48 Ligands: ACY.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.48, A:E.48, H2O.40, H2O.112 ZN.14: 6 residues within 4Å: Chain A: D.55, E.59 Chain C: H.28, H.40, Y.47 Ligands: ZN.37 5 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:D.55, A:D.55, A:E.59, C:H.28, H2O.110 ZN.15: 3 residues within 4Å: Chain A: E.96 Ligands: ACY.1, ACY.9 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.96, A:E.96 ZN.16: 3 residues within 4Å: Chain A: C.71, Q.72 Ligands: ACY.6 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.71, H2O.22, H2O.135 ZN.17: 2 residues within 4Å: Chain A: E.114, K.118 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.114, A:E.114 ZN.18: 2 residues within 4Å: Chain A: C.150 Chain G: C.88 5 PLIP interactions: 1 interactions with chain G, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: G:C.88, A:C.150, H2O.134, H2O.1005, H2O.1007 ZN.25: 4 residues within 4Å: Chain B: E.41, E.44 Ligands: ACY.22, ZN.26 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.41, B:E.41, B:E.44, H2O.210 ZN.26: 5 residues within 4Å: Chain B: H.28, H.40 Chain H: E.59 Ligands: ZN.25, ZN.27 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.40, H2O.191, H2O.210, H2O.1112 ZN.27: 6 residues within 4Å: Chain B: H.28, H.40, Y.47 Chain H: D.55, E.59 Ligands: ZN.26 5 PLIP interactions: 3 interactions with chain H, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: H:D.55, H:D.55, H:E.59, B:H.28, H2O.1112 ZN.28: 2 residues within 4Å: Chain B: E.48 Ligands: ACY.19 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.48, B:E.48, H2O.223, H2O.280 ZN.29: 3 residues within 4Å: Chain B: C.71, Q.72 Ligands: ACY.20 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.71, H2O.178, H2O.294 ZN.30: 2 residues within 4Å: Chain B: C.88 Chain G: C.150 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: G:C.150, B:C.88, H2O.291, H2O.1004 ZN.31: 4 residues within 4Å: Chain A: C.88 Chain B: A.149, C.150 Ligands: ACY.7 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:C.88, B:C.150, H2O.48, H2O.262 ZN.36: 6 residues within 4Å: Chain C: E.41, E.44 Ligands: ACY.33, ACY.34, ACY.35, ZN.37 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.41, C:E.41, C:E.44 ZN.37: 6 residues within 4Å: Chain A: E.59 Chain C: H.28, H.40 Ligands: ZN.14, ACY.34, ZN.36 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.40, H2O.31, H2O.110 ZN.38: 6 residues within 4Å: Chain A: H.28, H.40, Y.47 Chain C: D.55, E.59 Ligands: ZN.11 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:D.55, C:D.55, C:E.59, A:H.28, H2O.89 ZN.39: 5 residues within 4Å: Chain C: C.71, Q.72 Ligands: ACY.2, ACY.5, ACY.32 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.71 ZN.40: 2 residues within 4Å: Chain C: E.48 Ligands: ACY.35 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.48, C:E.48, H2O.342, H2O.415 ZN.50: 6 residues within 4Å: Chain D: H.28, H.40 Chain J: E.59 Ligands: ACY.44, ZN.51, ZN.52 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.40, H2O.443, H2O.519 ZN.51: 7 residues within 4Å: Chain D: H.28, H.40, Y.47 Chain J: D.55, E.59 Ligands: ACY.44, ZN.50 5 PLIP interactions: 1 interactions with chain D, 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: D:H.28, J:D.55, J:D.55, J:E.59, H2O.519 ZN.52: 5 residues within 4Å: Chain D: E.41, E.44 Ligands: ACY.42, ACY.43, ZN.50 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.41, D:E.41, D:E.44, H2O.443 ZN.53: 4 residues within 4Å: Chain D: C.71, Q.72 Ligands: ACY.45, ACY.46 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.71, H2O.561 ZN.54: 2 residues within 4Å: Chain D: E.48 Ligands: ACY.43 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.48, D:E.48, H2O.509 ZN.55: 3 residues within 4Å: Chain D: C.88 Chain L: C.150 Ligands: ACY.157 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain L, 2 Ligand-Water interactions Metal complexes: D:C.88, L:C.150, H2O.557, H2O.1704 ZN.66: 7 residues within 4Å: Chain E: H.28, H.40 Chain F: M.141 Chain G: E.59 Ligands: ZN.67, ACY.76, ZN.93 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.40, H2O.662, H2O.756 ZN.67: 5 residues within 4Å: Chain E: E.41, E.44 Ligands: ACY.59, ZN.66, ACY.76 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.41, E:E.41, E:E.44 ZN.68: 2 residues within 4Å: Chain E: E.48 Ligands: ACY.58 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.48, E:E.48, H2O.613, H2O.685 ZN.69: 6 residues within 4Å: Chain E: D.55, E.59 Chain G: H.28, H.40, Y.47 Ligands: ZN.92 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: E:D.55, E:D.55, E:E.59, G:H.28, H2O.683 ZN.70: 3 residues within 4Å: Chain E: E.96 Ligands: ACY.56, ACY.64 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.96, E:E.96 ZN.71: 3 residues within 4Å: Chain E: C.71, Q.72 Ligands: ACY.61 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:C.71, H2O.595, H2O.708 ZN.72: 2 residues within 4Å: Chain E: E.114, K.118 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.114, E:E.114 ZN.73: 2 residues within 4Å: Chain E: C.150 Chain K: C.88 5 PLIP interactions: 1 interactions with chain K, 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: K:C.88, E:C.150, H2O.707, H2O.1578, H2O.1580 ZN.80: 4 residues within 4Å: Chain F: E.41, E.44 Ligands: ACY.77, ZN.81 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.41, F:E.41, F:E.44, H2O.783 ZN.81: 5 residues within 4Å: Chain F: H.28, H.40 Chain L: E.59 Ligands: ZN.80, ZN.82 4 PLIP interactions: 1 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:H.40, H2O.764, H2O.783, H2O.1685 ZN.82: 6 residues within 4Å: Chain F: H.28, H.40, Y.47 Chain L: D.55, E.59 Ligands: ZN.81 5 PLIP interactions: 3 interactions with chain L, 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: L:D.55, L:D.55, L:E.59, F:H.28, H2O.1685 ZN.83: 2 residues within 4Å: Chain F: E.48 Ligands: ACY.74 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.48, F:E.48, H2O.796, H2O.853 ZN.84: 3 residues within 4Å: Chain F: C.71, Q.72 Ligands: ACY.75 3 PLIP interactions: 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:C.71, H2O.751, H2O.867 ZN.85: 2 residues within 4Å: Chain F: C.88 Chain K: C.150 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain K, 2 Ligand-Water interactions Metal complexes: F:C.88, K:C.150, H2O.864, H2O.1577 ZN.86: 4 residues within 4Å: Chain E: C.88 Chain F: A.149, C.150 Ligands: ACY.62 4 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F, 2 Ligand-Water interactions Metal complexes: E:C.88, F:C.150, H2O.621, H2O.835 ZN.91: 6 residues within 4Å: Chain G: E.41, E.44 Ligands: ACY.88, ACY.89, ACY.90, ZN.92 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.41, G:E.41, G:E.44 ZN.92: 6 residues within 4Å: Chain E: E.59 Chain G: H.28, H.40 Ligands: ZN.69, ACY.89, ZN.91 3 PLIP interactions: 1 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:H.40, H2O.604, H2O.683 ZN.93: 6 residues within 4Å: Chain E: H.28, H.40, Y.47 Chain G: D.55, E.59 Ligands: ZN.66 5 PLIP interactions: 3 interactions with chain G, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: G:D.55, G:D.55, G:E.59, E:H.28, H2O.662 ZN.94: 5 residues within 4Å: Chain G: C.71, Q.72 Ligands: ACY.57, ACY.60, ACY.87 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:C.71 ZN.95: 2 residues within 4Å: Chain G: E.48 Ligands: ACY.90 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.48, G:E.48, H2O.915, H2O.988 ZN.105: 6 residues within 4Å: Chain B: E.59 Chain H: H.28, H.40 Ligands: ACY.99, ZN.106, ZN.107 3 PLIP interactions: 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:H.40, H2O.1016, H2O.1092 ZN.106: 7 residues within 4Å: Chain B: D.55, E.59 Chain H: H.28, H.40, Y.47 Ligands: ACY.99, ZN.105 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: B:D.55, B:D.55, B:E.59, H:H.28, H2O.1092 ZN.107: 5 residues within 4Å: Chain H: E.41, E.44 Ligands: ACY.97, ACY.98, ZN.105 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.41, H:E.41, H:E.44, H2O.1016 ZN.108: 4 residues within 4Å: Chain H: C.71, Q.72 Ligands: ACY.100, ACY.101 2 PLIP interactions: 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:C.71, H2O.1134 ZN.109: 2 residues within 4Å: Chain H: E.48 Ligands: ACY.98 3 PLIP interactions: 2 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.48, H:E.48, H2O.1082 ZN.110: 3 residues within 4Å: Chain D: C.150 Chain H: C.88 Ligands: ACY.47 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: D:C.150, H:C.88, H2O.558, H2O.1130 ZN.121: 7 residues within 4Å: Chain I: H.28, H.40 Chain J: M.141 Chain K: E.59 Ligands: ZN.122, ACY.131, ZN.148 3 PLIP interactions: 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:H.40, H2O.1235, H2O.1329 ZN.122: 5 residues within 4Å: Chain I: E.41, E.44 Ligands: ACY.114, ZN.121, ACY.131 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.41, I:E.41, I:E.44 ZN.123: 2 residues within 4Å: Chain I: E.48 Ligands: ACY.113 4 PLIP interactions: 2 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.48, I:E.48, H2O.1186, H2O.1258 ZN.124: 6 residues within 4Å: Chain I: D.55, E.59 Chain K: H.28, H.40, Y.47 Ligands: ZN.147 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: I:D.55, I:D.55, I:E.59, K:H.28, H2O.1256 ZN.125: 3 residues within 4Å: Chain I: E.96 Ligands: ACY.111, ACY.119 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:E.96, I:E.96 ZN.126: 3 residues within 4Å: Chain I: C.71, Q.72 Ligands: ACY.116 3 PLIP interactions: 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:C.71, H2O.1168, H2O.1281 ZN.127: 2 residues within 4Å: Chain I: E.114, K.118 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:E.114, I:E.114 ZN.128: 2 residues within 4Å: Chain C: C.88 Chain I: C.150 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain I, 3 Ligand-Water interactions Metal complexes: C:C.88, I:C.150, H2O.432, H2O.434, H2O.1280 ZN.135: 4 residues within 4Å: Chain J: E.41, E.44 Ligands: ACY.132, ZN.136 4 PLIP interactions: 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:E.41, J:E.41, J:E.44, H2O.1356 ZN.136: 5 residues within 4Å: Chain D: E.59 Chain J: H.28, H.40 Ligands: ZN.135, ZN.137 4 PLIP interactions: 1 interactions with chain J, 3 Ligand-Water interactions Metal complexes: J:H.40, H2O.539, H2O.1337, H2O.1356 ZN.137: 6 residues within 4Å: Chain D: D.55, E.59 Chain J: H.28, H.40, Y.47 Ligands: ZN.136 5 PLIP interactions: 3 interactions with chain D, 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: D:D.55, D:D.55, D:E.59, J:H.28, H2O.539 ZN.138: 2 residues within 4Å: Chain J: E.48 Ligands: ACY.129 4 PLIP interactions: 2 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.48, J:E.48, H2O.1369, H2O.1426 ZN.139: 3 residues within 4Å: Chain J: C.71, Q.72 Ligands: ACY.130 3 PLIP interactions: 1 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:C.71, H2O.1324, H2O.1440 ZN.140: 2 residues within 4Å: Chain C: C.150 Chain J: C.88 4 PLIP interactions: 1 interactions with chain J, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: J:C.88, C:C.150, H2O.431, H2O.1437 ZN.141: 4 residues within 4Å: Chain I: C.88 Chain J: A.149, C.150 Ligands: ACY.117 4 PLIP interactions: 1 interactions with chain I, 1 interactions with chain J, 2 Ligand-Water interactions Metal complexes: I:C.88, J:C.150, H2O.1194, H2O.1408 ZN.146: 6 residues within 4Å: Chain K: E.41, E.44 Ligands: ACY.143, ACY.144, ACY.145, ZN.147 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.41, K:E.41, K:E.44 ZN.147: 6 residues within 4Å: Chain I: E.59 Chain K: H.28, H.40 Ligands: ZN.124, ACY.144, ZN.146 3 PLIP interactions: 1 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:H.40, H2O.1177, H2O.1256 ZN.148: 6 residues within 4Å: Chain I: H.28, H.40, Y.47 Chain K: D.55, E.59 Ligands: ZN.121 5 PLIP interactions: 3 interactions with chain K, 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: K:D.55, K:D.55, K:E.59, I:H.28, H2O.1235 ZN.149: 5 residues within 4Å: Chain K: C.71, Q.72 Ligands: ACY.112, ACY.115, ACY.142 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:C.71 ZN.150: 2 residues within 4Å: Chain K: E.48 Ligands: ACY.145 4 PLIP interactions: 2 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.48, K:E.48, H2O.1488, H2O.1561 ZN.160: 6 residues within 4Å: Chain F: E.59 Chain L: H.28, H.40 Ligands: ACY.154, ZN.161, ZN.162 3 PLIP interactions: 1 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:H.40, H2O.1589, H2O.1665 ZN.161: 7 residues within 4Å: Chain F: D.55, E.59 Chain L: H.28, H.40, Y.47 Ligands: ACY.154, ZN.160 5 PLIP interactions: 1 interactions with chain L, 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: L:H.28, F:D.55, F:D.55, F:E.59, H2O.1665 ZN.162: 5 residues within 4Å: Chain L: E.41, E.44 Ligands: ACY.152, ACY.153, ZN.160 4 PLIP interactions: 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.41, L:E.41, L:E.44, H2O.1589 ZN.163: 4 residues within 4Å: Chain L: C.71, Q.72 Ligands: ACY.155, ACY.156 2 PLIP interactions: 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:C.71, H2O.1707 ZN.164: 2 residues within 4Å: Chain L: E.48 Ligands: ACY.153 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.48, L:E.48, H2O.1655 ZN.165: 3 residues within 4Å: Chain H: C.150 Chain L: C.88 Ligands: ACY.102 4 PLIP interactions: 1 interactions with chain L, 1 interactions with chain H, 2 Ligand-Water interactions Metal complexes: L:C.88, H:C.150, H2O.1131, H2O.1703

9 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.24: 6 residues within 4Å: Chain A: L.34 Chain B: Q.35, S.38, I.39, Y.42 Ligands: GOL.10 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.39 Hydrogen bonds: B:S.38, A:L.34 BU1.48: 8 residues within 4Å: Chain D: L.34, Q.35, F.36, F.37 Chain L: M.141, I.142, T.145 Ligands: BU1.159 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain L Hydrophobic interactions: D:F.37, L:T.145 Hydrogen bonds: D:L.34, D:F.37 Water bridges: D:S.38, L:S.138 BU1.49: 5 residues within 4Å: Chain D: Q.35, S.38, I.39 Chain H: L.34 Ligands: BU1.103 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:I.39 Hydrogen bonds: D:S.38 Water bridges: D:Q.35, D:Q.35, D:Q.35 BU1.79: 6 residues within 4Å: Chain E: L.34 Chain F: Q.35, S.38, I.39, Y.42 Ligands: GOL.65 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:L.34, F:S.38 Hydrophobic interactions: F:I.39 BU1.103: 8 residues within 4Å: Chain D: M.141, I.142, T.145 Chain H: L.34, Q.35, F.36, F.37 Ligands: BU1.49 6 PLIP interactions: 4 interactions with chain H, 2 interactions with chain D Hydrophobic interactions: H:F.37, D:T.145 Hydrogen bonds: H:L.34, H:F.37 Water bridges: H:S.38, D:S.138 BU1.104: 5 residues within 4Å: Chain H: Q.35, S.38, I.39 Chain L: L.34 Ligands: BU1.158 5 PLIP interactions: 5 interactions with chain H Hydrophobic interactions: H:I.39 Hydrogen bonds: H:S.38 Water bridges: H:Q.35, H:Q.35, H:Q.35 BU1.134: 6 residues within 4Å: Chain I: L.34 Chain J: Q.35, S.38, I.39, Y.42 Ligands: GOL.120 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:I.39 Hydrogen bonds: J:S.38, I:L.34 BU1.158: 8 residues within 4Å: Chain H: M.141, I.142, T.145 Chain L: L.34, Q.35, F.36, F.37 Ligands: BU1.104 6 PLIP interactions: 4 interactions with chain L, 2 interactions with chain H Hydrophobic interactions: L:F.37, H:T.145 Hydrogen bonds: L:L.34, L:F.37 Water bridges: L:S.38, H:S.138 BU1.159: 5 residues within 4Å: Chain D: L.34 Chain L: Q.35, S.38, I.39 Ligands: BU1.48 5 PLIP interactions: 5 interactions with chain L Hydrophobic interactions: L:I.39 Hydrogen bonds: L:S.38 Water bridges: L:Q.35, L:Q.35, L:Q.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Putative Bacterioferritin from Campylobacter jejuni. To be Published

Release Date

2010-01-19

Peptides

Putative bacterioferritin: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

I
A

J
B

K
C

L
D

Putative bacterioferritin