SMTL ID : 3kz4.1 (1 other biounit)

Crystal Structure of the Rotavirus Double Layered Particle

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-2-13-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 4 residues within 4Å: Chain C: H.153 Chain D: H.153, K.154 Chain E: H.153 3 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain E Metal complexes: D:H.153, C:H.153, E:H.153 ZN.2: 5 residues within 4Å: Chain F: H.153 Chain G: H.153, K.154 Chain H: H.153, K.154 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G, 1 interactions with chain H Metal complexes: F:H.153, G:H.153, H:H.153 ZN.3: 6 residues within 4Å: Chain I: H.153, K.154 Chain J: H.153, K.154 Chain K: H.153, K.154 3 PLIP interactions: 1 interactions with chain I, 1 interactions with chain J, 1 interactions with chain K Metal complexes: I:H.153, J:H.153, K:H.153 ZN.4: 6 residues within 4Å: Chain L: H.153, K.154 Chain M: H.153, K.154 Chain N: H.153, K.154 3 PLIP interactions: 1 interactions with chain N, 1 interactions with chain M, 1 interactions with chain L Metal complexes: N:H.153, M:H.153, L:H.153 ZN.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McClain, B. et al., X-ray crystal structure of the rotavirus inner capsid particle at 3.8 A resolution. J.Mol.Biol. (2010)

Release Date

2010-03-02

Peptides

Inner capsid protein VP2: AB
Intermediate capsid protein VP6: CDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

Inner capsid protein VP2

Intermediate capsid protein VP6

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