SMTL ID : 3kzq.3 (2 other biounits)

The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.1: 5 residues within 4Å: Chain A: L.49, P.52, E.54, M.55, K.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.55, A:K.58

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Q.56, W.79, K.80, C.82, T.83, P.84 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.56, A:Q.56, A:K.80 Water bridges: A:T.83 GOL.3: 6 residues within 4Å: Chain A: G.99, D.102, S.103, Y.104, E.105, Q.106 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.99, A:Y.104, A:E.105, A:Q.106 Water bridges: A:D.102, A:Q.106 GOL.4: 7 residues within 4Å: Chain A: M.12, C.13, S.14, W.15, L.43, L.59, R.86 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.14, A:W.15, A:R.86, A:R.86 Water bridges: A:S.14, A:S.14, A:W.63, A:W.63 GOL.5: 6 residues within 4Å: Chain B: G.99, D.102, S.103, Y.104, E.105, Q.106 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.99, B:Y.104, B:E.105, B:Q.106 Water bridges: B:Q.106 GOL.6: 6 residues within 4Å: Chain B: M.12, C.13, S.14, W.15, L.43, R.86 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.14, B:W.15, B:R.86, B:R.86 Water bridges: B:M.12, B:M.12, B:S.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633. To be Published

Release Date

2010-02-02

Peptides

Putative uncharacterized protein VP2116: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Putative uncharacterized protein VP2116

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