SMTL ID : 3l57.1 (1 other biounit)

Crystal Structure of the Plasmid pCU1 TraI Relaxase Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x MN3: MANGANESE (III) ION(Non-covalent)

MN3.1: 4 residues within 4Å: Chain A: H.149, H.160, H.162 Ligands: CIT.22 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.149, A:H.160, A:H.162

19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.9, Q.10, N.11, V.12, T.13 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: S.35, W.36, S.47, G.48 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: S.28, F.33, T.34, F.147, R.148 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: D.24, D.25, S.52, A.53 Ligands: EDO.11 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: T.104, E.107, A.108, K.111, E.202 Ligands: EDO.7 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain A: A.206 Ligands: EDO.6 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: Q.125, K.180, D.182, E.183, R.186 Ligand excluded by PLIP EDO.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: A.115, R.118, E.119, E.198 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain A: S.20, S.52, A.53, K.56 Ligands: EDO.5 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: L.210, Y.212 Ligands: EDO.18 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain A: V.60, E.62 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: R.54, E.57, I.63, D.64 Ligand excluded by PLIP EDO.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP EDO.16: 1 residues within 4Å: Chain A: H.190 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: R.186, N.187, K.188, M.189, H.190 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain A: T.204, Y.208, E.209, L.210, Y.212 Ligands: EDO.12 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain A: Y.212, N.213, N.217, T.218 Ligand excluded by PLIP EDO.20: 3 residues within 4Å: Chain A: H.149, E.150, T.151 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.21: 2 residues within 4Å: Chain A: R.171, R.177 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.171, A:R.177

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.22: 4 residues within 4Å: Chain A: H.149, H.160, H.162 Ligands: MN3.1 6 PLIP interactions: 6 interactions with chain A Water bridges: A:T.86 Salt bridges: A:H.149, A:H.149, A:H.160, A:H.160, A:H.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nash, R.P. et al., The mechanism and control of DNA transfer by the conjugative relaxase of resistance plasmid pCU1. Nucleic Acids Res. (2010)

Release Date

2010-05-19

Peptides

Mobilization protein TraI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mobilization protein TraI

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