SMTL ID : 3l5i.1

Crystal structure of FnIII domains of human GP130 (Domains 4-6)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: V.137, Y.170 Ligands: EDO.10 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: P.112, A.190, Y.191, Q.194, F.228 Ligand excluded by PLIP EDO.3: 8 residues within 4Å: Chain A: F.235, Y.236, R.237, E.243, M.267, V.268, R.269, E.283 Ligand excluded by PLIP EDO.4: 8 residues within 4Å: Chain A: F.99, Q.100, A.101, T.102, Y.178, D.180, P.182, G.183 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: F.235, R.269, A.271, Y.273, G.278, D.280 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: T.123, E.126, S.127, V.128, G.153 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: T.102, H.103, P.104, M.106 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: E.134, W.135, C.136, T.146, L.171, I.172, T.173 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: W.11, V.28, E.134, T.146, W.148 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: W.135, V.137, I.145, T.146, D.147 Ligands: EDO.1 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain A: I.41, L.42, Y.44, N.61, A.62 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: W.11, Y.12, K.13, P.182 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: A.62, T.63, K.64 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: M.116, L.117, L.160, G.162, N.163, L.164 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: K.207, G.209, E.212, V.214, T.256 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: T.238, S.259, L.260, T.261, Y.266 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain A: Y.255, T.256 Ligand excluded by PLIP

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 4 residues within 4Å: Chain A: G.209, K.210, N.211, E.212 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain A: I.188, K.189 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain A: S.9, Q.149, Q.150, R.161 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., Crystal structure of the entire ectodomain of gp130: insights into the molecular assembly of the tall cytokine receptor complexes. J.Biol.Chem. (2010)

Release Date

2010-05-12

Peptides

Interleukin-6 receptor subunit beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interleukin-6 receptor subunit beta