SMTL ID : 3l7c.1

Crystal Structure of Glycogen Phosphorylase DK4 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x DK4: 1-(3-deoxy-3-fluoro-beta-D-glucopyranosyl)-5-fluoropyrimidine-2,4(1H,3H)-dione(Non-covalent)

DK4.1: 17 residues within 4Å: Chain A: G.135, G.136, L.137, L.140, D.284, N.285, D.340, H.378, T.379, V.456, N.485, Y.574, E.673, A.674, S.675, G.676, T.677 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.136, A:L.137, A:D.284, A:N.285, A:N.285, A:N.285, A:N.485, A:Y.574, A:E.673, A:G.676, A:G.676 Water bridges: A:G.138, A:K.575, A:A.674, A:T.677 DK4.2: 17 residues within 4Å: Chain B: G.135, G.136, L.137, L.140, D.284, N.285, D.340, H.378, T.379, V.456, N.485, Y.574, E.673, A.674, S.675, G.676, T.677 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:G.136, B:L.137, B:D.284, B:N.285, B:N.285, B:N.285, B:H.378, B:N.485, B:G.676, B:G.676 Water bridges: B:G.138, B:K.575, B:A.674, B:T.677

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsirkone, V.G. et al., 1-(3-Deoxy-3-fluoro-beta-d-glucopyranosyl) pyrimidine derivatives as inhibitors of glycogen phosphorylase b: Kinetic, crystallographic and modelling studies. Bioorg.Med.Chem. (2010)

Release Date

2010-10-20

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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