SMTL ID : 3l7d.1

Crystal Structure of Glycogen Phosphorylase DK5 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x DK5: 1-(2,3-dideoxy-3-fluoro-beta-D-arabino-hexopyranosyl)-4-[(phenylcarbonyl)amino]pyrimidin-2(1H)-one(Non-covalent)

DK5.1: 18 residues within 4Å: Chain A: G.136, L.137, N.283, N.285, F.286, F.287, R.293, H.342, H.378, T.379, A.384, V.456, N.485, E.673, A.674, S.675, G.676, T.677 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.379, A:A.384 Hydrogen bonds: A:G.136, A:L.137, A:N.285, A:N.285, A:G.676, A:G.676 Water bridges: A:G.138, A:T.677 DK5.2: 18 residues within 4Å: Chain B: G.136, L.137, N.283, N.285, F.286, F.287, R.293, H.342, H.378, T.379, A.384, V.456, N.485, E.673, A.674, S.675, G.676, T.677 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.379, B:A.384 Hydrogen bonds: B:G.136, B:L.137, B:N.285, B:N.285, B:H.378, B:G.676, B:G.676 Water bridges: B:G.138, B:D.284, B:D.284, B:T.677

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsirkone, V.G. et al., 1-(3-Deoxy-3-fluoro-beta-d-glucopyranosyl) pyrimidine derivatives as inhibitors of glycogen phosphorylase b: Kinetic, crystallographic and modelling studies. Bioorg.Med.Chem. (2010)

Release Date

2010-10-20

Peptides

Glycogen phosphorylase, muscle form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogen phosphorylase, muscle form

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