SMTL ID : 3l8g.1

Crystal Structure of D,D-heptose 1.7-bisphosphate phosphatase from E. Coli complexed with D-glycero-D-manno-heptose 1 ,7-bisphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.11, D.13, D.136 Ligands: GMB.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.11, A:D.13, A:D.136, H2O.2, H2O.3

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.92, H.94, C.107, C.109, R.110 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.92, A:H.94, A:C.107, A:C.109

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: Y.22, S.56 Ligands: GMB.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.22, A:S.56

1 x GMB: 1,7-di-O-phosphono-L-glycero-beta-D-manno-heptopyranose(Non-covalent)

GMB.4: 15 residues within 4Å: Chain A: D.11, R.12, D.13, D.19, G.21, Y.22, T.53, N.54, Q.55, S.56, R.110, K.111, K.137 Ligands: MG.1, NA.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:R.12, A:D.13, A:D.13, A:D.19, A:D.19, A:Y.22, A:N.54, A:S.56 Water bridges: A:D.19, A:V.23, A:N.54, A:R.110, A:R.110, A:R.110, A:R.110, A:R.110 Salt bridges: A:R.110, A:K.111, A:K.137, A:K.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, H.H. et al., Structural Determinants of Substrate Recognition in the HAD Superfamily Member d-glycero-d-manno-Heptose-1,7-bisphosphate Phosphatase (GmhB) . Biochemistry (2010)

Release Date

2010-02-02

Peptides

D,D-heptose 1,7-bisphosphate phosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D,D-heptose 1,7-bisphosphate phosphatase

Related Entries With Identical Sequence