SMTL ID : 3l8q.1 (3 other biounits)

Structure analysis of the type II cohesin dyad from the adaptor ScaA scaffoldin of Acetivibrio cellulolyticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: S.97, L.98, D.99, D.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.99, A:D.100, A:D.100 Water bridges: A:L.98 EDO.2: 4 residues within 4Å: Chain A: K.42, Y.43, D.44, S.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.127 Water bridges: A:K.42, A:K.42, A:K.42, A:D.44 EDO.3: 7 residues within 4Å: Chain A: E.8, I.9, I.160, P.162, A.163, Q.331, P.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.162, A:P.332 Water bridges: A:V.164 EDO.4: 5 residues within 4Å: Chain A: Q.249, V.251, N.260, L.261, S.262 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.206, A:N.260 Water bridges: A:S.262 EDO.5: 4 residues within 4Å: Chain A: A.57, Y.58, T.59, L.84 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain A: N.30, I.31, T.32, I.153, S.155, G.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.5, A:N.30, A:T.32, A:T.32 EDO.8: 6 residues within 4Å: Chain A: T.125, N.166, L.167, D.168, K.171, A.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.166, A:D.168

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.7: 3 residues within 4Å: Chain A: D.81, N.82, D.83 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.83 Hydrogen bonds: A:D.81 Water bridges: A:E.85, A:E.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noach, I. et al., Modular Arrangement of a Cellulosomal Scaffoldin Subunit Revealed from the Crystal Structure of a Cohesin Dyad. J.Mol.Biol. (2010)

Release Date

2010-05-05

Peptides

Cellulosomal scaffoldin adaptor protein B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellulosomal scaffoldin adaptor protein B

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